DreINT0133531 @ danRer10
Intron Retention
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22101978-22102343:-
Coord C1 exon
chr16:22102196-22102343
Coord A exon
chr16:22102107-22102195
Coord C2 exon
chr16:22101978-22102106
Length
89 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TCTCATTTCCTCCATTTCAGGAG
3' ss Score
10.59
Exon sequences
Seq C1 exon
GAGCACTGAGGACAAAGGGCCCTGTAGTTCAGTACACCAGTGACAATAGTGCTGCCGCATCTACTGGTGGTGGTGCCGCAACTCCTGGCACTCCTACTCGTCCTGTAGCCCCACAGCCTGCTGGACCCCCGCAACCGTCCCGCACAGA
Seq A exon
GTGAGTGCTTTATCTGTTCTCTCATAGTGCTACATTTATTTACCGAGATCAAGTTCTAAAACATGTTTCTCTCATTTCCTCCATTTCAG
Seq C2 exon
GAGTCCTAGTTTTAAGAGTCAAATGGCTAAGAAGAGCACTGGTCAACTCGCACTGCAGCCTCGTCAGGGCATGCCCTCTGACCTTCAGCCTAAACCAATAATCAATGCTCTTCAGACCAATACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021:ENSDART00000165824:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTGTAGTTCAGTACACC
R:
GCGAGTTGACCAGTGCTCTTC
Band lengths:
182-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]