Special

BtaINT0131654 @ bosTau6

Intron Retention

Gene
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19847239-19848558:-
Coord C1 exon
chr3:19848389-19848558
Coord A exon
chr3:19847868-19848388
Coord C2 exon
chr3:19847239-19847867
Length
521 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
GGCTTTCTCTTCATTCCCAGGGA
3' ss Score
9.12
Exon sequences
Seq C1 exon
AGTTTATGAGTGTAACAAACGCTGCAAATGTGACCCTAACATGTGCACAAACCGGTTGGTACAGCATGGCCTGCAGGTTCGTCTGCAGCTCTTCAAGACCCAGAACAAGGGCTGGGGTATCCGTTGCTTGGATGACATTGCCAAAGGCTCCTTTGTCTGTATTTATGCAG
Seq A exon
GTTAGTGATGAAAGGGTTGCTTTCTGGGGTTAGAACATGGTGGAACATTGAATCAGAGACAAGTTGAATTTAAGAATAAAATGCTTAACCTGTGAACTAGGAGAAAGAAGAAGACAGAATTTTCTTCTATAAAGAACATGAGTGATGTGACTGTCTGAGTGGATCAGGAAGGGTCAAAAGTGCTTCAGGAGAATAAGAACAAAAAGGGATGAAATTGTGGACATGTTTCAGCAGAGAGAGACATGGTTTTAGAAAAAAATGACATGTGTCATTTTTCCCCACATCACTCTACCCAGAGATTCAGCATAACTTAGGGAGAATGGGGTGGCAGAAAGGGCAAGATTTAAAGCTCCCCTTACTCTCACAGTTAAGACACTAAGGAGGAGGTATCATCAAAGGGAAACAAGAGACCATAATGAATGTTATTTGACTCTGTACTGTGGGGCTAGGTATTGATGAAATGAACTTTATTCTTTCTAAAAGCTCCTCATAACCCTGGAAGGCTTTCTCTTCATTCCCAG
Seq C2 exon
GGAAGATCCTGACAGATGACTTTGCTGACAAGGAGGGCCTAGAAATGGGTGATGAGTACTTTGCCAATCTGGACCATATTGAGAGCGTGGAGAACTTCAAGGAGGGGTATGAGAGTGATGCCCCCTGCTCCTCTGACAGCAGTGGTGTAGACTTGAAGGACCAGGAAGACGGCAACAGTGGTACAGAGGACCCCGAGGAGTCCAATGACGACAGCTCAGATGACAACTTCTGTAAGGACGAGGACTTCAGCACCAGCTCGGTGTGGCGCAGCTATGCTACCCGACGGCAGACCCGGGGCCAGAAGGAGAATGGATTGTCTGAGATGTCTTCCAAGGACTCTCGCCCCCCAGACCTAGGGCCCCCACATATTCCTGTCCCTCCATCAATCCCTGTAGGTGGCTGCAATCCACCTTCCTCTGAAGAGACACCTAAGAACAAAGTGGCCTCGTGGTTGAGCTGCAACAGTGTCAGTGAAGGTGGCTTTGCTGACTCTGATAGCCGTTCATCCTTCAAGACTAGTGAAGGTGGGGAAGGCCGCACTGGGGGAAGCAGAGGGGAAGCTGAGAAGGCTTCCACCTCAGGGCTTGGCTTCAAGGATGAGGGAGACATCAAGCAGGCCAAGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098:ENSBTAT00000000107:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.767
Domain overlap (PFAM):

C1:
PF0503311=Pre-SET=PD(15.7=31.0),PF0085623=SET=PU(4.4=34.5)
A:
NA
C2:
PF0085623=SET=FE(46.1=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACGCTGCAAATGTGACCC
R:
CTCTGTACCACTGTTGCCGTC
Band lengths:
343-864
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]