BtaINT0131658 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19844911-19845636:-
Coord C1 exon
chr3:19845471-19845636
Coord A exon
chr3:19845123-19845470
Coord C2 exon
chr3:19844911-19845122
Length
348 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGTC
5' ss Score
0.06
3' ss Seq
CCATTCTTCTCCTTCTCCAGGTC
3' ss Score
11.95
Exon sequences
Seq C1 exon
GATATCCTGACCCTGTCCAGCAGCACAGAAAGTGAGGGGGAAAGTGGGACCAGCCGGAAGCCCACTGCTGGCCAGACTTCAGCCGCAGCCGTGGACAGTGATGATATCCAGACCATCTCCTCTGGCTCTGAAGGGGATGACTTTGAGGACAAGAAGAACATGTCTG
Seq A exon
GTAGTCTGGAAGAATTTGTGGAGTAGTAGGAAGGAACCAGTAGGGGAAAAATTCAGATCTTAGGAAGCATCCCTGGGAAGACTCCCTGACTTCCAGCTAAACTGTTAATAATGTGTGACATATCCCCTCCCTCTGTTCTTTCTAGTTCTTTTCCCTCTGCTTCTGTATCCAGCAGATCTAATCCTGCTTGAAAAAAACTGCCACCTTGGGCCTTTGCCTCAGAGTCCCAGCTTATTGGTATTCCTGAGGTGCACTGGGTGGGATAAAAATGGAAGCAGGAAAAAAAAGGAAGTAGAAGGTCCAATCATGAGGTGGGGTGGACCTAGCCCCATTCTTCTCCTTCTCCAG
Seq C2 exon
GTCCAATGAAGCGCCAAGTGGCAGTAAAATCCACCCGGGGTTTTGCTTTGAAATCAACCCATGGCATTGCCATTAAATCAACCAACATGGCATCTGTGGAAAAGGGGGAGAGTGCACCCATTCGTAAGAACACACGCCAGTTCTATGATGGGGAGGAGTCTTGCTACATCATCGATGCCAAGCTTGAAGGCAACCTGGGCCGCTACCTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098:ENSBTAT00000000107:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.310
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(12.1=100)
A:
NA
C2:
PF0085623=SET=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCTGACCCTGTCCAGCAG
R:
GCCTTCAAGCTTGGCATCGAT
Band lengths:
355-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]