DreINT0133540 @ danRer10
Intron Retention
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22093799-22094964:-
Coord C1 exon
chr16:22094877-22094964
Coord A exon
chr16:22094038-22094876
Coord C2 exon
chr16:22093799-22094037
Length
839 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TCTGTGTGTCTTTCTGTCAGCTG
3' ss Score
9.09
Exon sequences
Seq C1 exon
GATGTGATGACTCTCTCCGACAGTGACGATGTGCAAACTATCAGCTCAGGATCAGATGACAATAAGGAGAGAGAGAAAAAGACTCAGG
Seq A exon
GTAAGTAAAGGAAAAGGGCAAATTGCTTCAGTCATCAGGGGACTTCCACTTTTCTGTCAACTGACTGAATCTGCATGTTTTATTGGTGCAGCATGAACAGAAATAAATGTGATGCTTTATATATTACATATTTATAATAAATGAGATTTTAATCATTTTGGCTATGCTACAGCAACCGGTTGTGAAAGCTGAATGGGCACAGGAAGGTCAGATAGTCTTACAACCATGAAGTTACTAAAGAATTATTACTCTATTTACCAGAATATGTCACTTAAAACGTGCAGCAACCTACATTTCAAAGTTGCTTATATAATGCAAGTAACTCCATACATACTAAACATGTAAAATGTTAATGGAGCTGTAATTATGTTTATTTTTATCAATCTTTCTTTCAATCTGAGTACAATTAAATGCAAATTCTTTCTATTGGAATAAATGGAACTTAACAGCTTTTTTGTTAATGCTTAATTTTTAAATAGATCTAGAGGTAGCCTATTTTACATAAATGTTTTAATGATGTTTTAATATCTGATACAAACACCAATGCAACTGCTTTGCACTGGGCCTAAACAGCATTATAGACAGAAAACAATGTTGCATTTATGAGAAAGTCTAAAAAAAAAAAAAAAAAAAAAAGTTTAAAATGTCAATAATGTGGTTTTGACTAAGGCTGCACTCAAAATTGAAGACTATTGTCATGTGCATTTGTCAGTAAAGCTAGCTTTGTTGATGAGCAGTTAATCTCCTGCATGAGAATCAAACAATAAGTCTAAAAACATCTTCGTTTTCTGGGGAATGCAGCATATTGGATATTTTCTCTCTGTGTGTCTTTCTGTCAG
Seq C2 exon
CTGTGGTGAAGAGGCAGGTGGCTGTGAAGTCCACACGTGGCATTGCTTTGAAGTCCCACAGTATGATGGTGAAATCAGGTGGAGGGGGTGCAGGAGGCGGTGGGTCAGGCCCGTCTCACGGCCATGGAGGAGGAGGTGGAGACAATGGCCCTAAAAACACCCGCCTGTTCTTTGATGGGGAGGAATCCTGCTACATCATTGATGCCAAACTAGAGGGCAACCTCGGACGCTACCTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021:ENSDART00000165824:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.553
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(10.6=100)
A:
NA
C2:
PF0085623=SET=PD(11.0=37.5),PF0085623=SET=PU(50.0=55.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGATGACTCTCTCCGACAGT
R:
GTTGAGGTAGCGTCCGAGGTT
Band lengths:
326-1165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]