BtaINT0131660 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19844564-19845122:-
Coord C1 exon
chr3:19844911-19845122
Coord A exon
chr3:19844653-19844910
Coord C2 exon
chr3:19844564-19844652
Length
258 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGA
5' ss Score
3.37
3' ss Seq
ATCTGTACTTAAACTTACAGCAC
3' ss Score
6.56
Exon sequences
Seq C1 exon
GTCCAATGAAGCGCCAAGTGGCAGTAAAATCCACCCGGGGTTTTGCTTTGAAATCAACCCATGGCATTGCCATTAAATCAACCAACATGGCATCTGTGGAAAAGGGGGAGAGTGCACCCATTCGTAAGAACACACGCCAGTTCTATGATGGGGAGGAGTCTTGCTACATCATCGATGCCAAGCTTGAAGGCAACCTGGGCCGCTACCTCAAT
Seq A exon
GTGAGACCCCTTTCGCTCACCTGTATGTGCTGGTTATCCCCTAGTCCTCACATTTCTAGTTCTTTTAAATACAACTCCATAAACCCATCTTTTCTCATTAAAATTCTTGATTGCAAAGGATCTTTAAAGAGGTGCCTTTCAAAATCTCTGTTGCCATGGGAGGATCAAATGGCATTGTTTTCATCCAGCTCTCACTCACCCCACAAAACCAGATTCTGTTTCCTTGGTTCCAAAGTGAATCTGTACTTAAACTTACAG
Seq C2 exon
CACAGTTGCAGCCCTAACCTGTTTGTCCAGAATGTCTTCGTGGATACTCATGATCTCCGCTTCCCGTGGGTGGCCTTCTTCGCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098:ENSBTAT00000000107:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(15.5=100)
A:
NA
C2:
PF0085623=SET=FE(6.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAATGAAGCGCCAAGTGG
R:
GCGAAGAAGGCCACCCAC
Band lengths:
294-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]