DreINT0133542 @ danRer10
Intron Retention
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22093563-22094037:-
Coord C1 exon
chr16:22093799-22094037
Coord A exon
chr16:22093652-22093798
Coord C2 exon
chr16:22093563-22093651
Length
147 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
TTGCGGTCTTTGTCCCACAGCAT
3' ss Score
9.06
Exon sequences
Seq C1 exon
CTGTGGTGAAGAGGCAGGTGGCTGTGAAGTCCACACGTGGCATTGCTTTGAAGTCCCACAGTATGATGGTGAAATCAGGTGGAGGGGGTGCAGGAGGCGGTGGGTCAGGCCCGTCTCACGGCCATGGAGGAGGAGGTGGAGACAATGGCCCTAAAAACACCCGCCTGTTCTTTGATGGGGAGGAATCCTGCTACATCATTGATGCCAAACTAGAGGGCAACCTCGGACGCTACCTCAAC
Seq A exon
GTGAGTCCTTGAGTAACTTGCAATTGACATGTTTGCATTTCATTCATTGGTATACAAAAGGATCCTGTAACAGATTTATTTTTATTTAGTTTTAGTTCACAACTACTGTGTTCACATCTCTTCTCTATTGCGGTCTTTGTCCCACAG
Seq C2 exon
CATAGCTGCAGCCCCAATCTGTTTGTCCAGAATGTGTTTGTGGACACTCACGACCTGCGCTTTCCCTGGGTGGCCTTCTTTGCTAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021:ENSDART00000165824:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(11.0=37.5),PF0085623=SET=PU(50.0=55.0)
A:
NA
C2:
PF0085623=SET=FE(33.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATTGCTTTGAAGTCCCA
R:
GGTCGTGAGTGTCCACAAACA
Band lengths:
257-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]