BtaINT0131676 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19127530-19133002:+
Coord C1 exon
chr12:19127530-19128093
Coord A exon
chr12:19128094-19132885
Coord C2 exon
chr12:19132886-19133002
Length
4792 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
ATACATTGTCTTCCTCCTAGAAC
3' ss Score
7.15
Exon sequences
Seq C1 exon
ATCTACAGAAAACCAGGAAATTCCCCCTATGGAAAATAAAGTTGCAGACTTTAGAGAAAAAGAATCTTCTTTAAATTTATCTTACCAAAAGCATCAGTGCTCTGGCTCCTGTCTGATGAAAATGCCATTTACCTTCAAGGGGGAAAACCCTCTGCAGCTACCAATCAAATGCCATTTCCAAAGACGACACGCGAAGACAAACTCTCATTCTTCAGCACTCCACGTGAGTTATAAAACCCCTTGTGGAAGGAGTCTGCGAAACATGGAGGAAGTTTTTCGTTACCTGCTTGAGACAGAGTGTAACTTTCTATTTACAGATAACTTTTCTTTCAATACCTATGCTCAGTTGACTCGGAATTACCCAAAGGAAGAAGAAATTGTTTCTGATGTGGATATTAGCAATGGCGTGGAATCGGTGCCCATTTCTTTCTGTAATGAAATTGACAATAGAAAACTTCCACAGTTTAAGTACAGAAAGACTATGTGGCCACGAGCATATTATCTAAACAGCTTTTCCAACATGTTTACTGATTCATGTGACTGTTCTGAGGGCTGCATAGACAT
Seq A exon
GTGAGTAGAAGAACATGGCATTTCAAAAAAATCTTCTGAATGTAGGGGCACTTGTCAAGAAATGCTGCTGTGTATCAGTTTGTTTGTCTGTCTTATCTAAAACCAGTTCATCAAGAATTGAAAATAGATGCACTCTCTCTTTAGCAATAGGAAGGAAACTCTTCACCTGTTATTTTATTTATTTGGGAATTATTTCTTGCAGAGATAAGTTTTTCCCTTAATCTGTTACTGTAACTCTTAATAGCAATAATTAGAGCTAATGCTGTGTAACTGTGCCAGACATTGTGACAAGTGCTTTCCCTCTATTTTCTTGTTTAGTCCTCACAAAGTCTTATGGAGTAGTTAATATTATTTCCATGTTACAAATGAGGAAGTTGAGAAACCAAATGTAAGGTCAACAAATTTAAGCACTAGGATTTGAACCTATGCTGCTTGCTGCTGCTGCTGCTAAGTCACTTGAGTCATGTCCGACTCTGTGCGACCCCACAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTATCCAGGCAAGAACACTGGAGTGGGTTGCCATTGCCTTCTCCAGTGCAAGCATGCATGCTAAGTCGCTTCAGTCGTGTCCGACTCTATGCTACCCTGTGGACAACAGCTCACCAGGCTCCTCTGGCCACAGGATTCTCTAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCTATGCTCTTAACTGTTATATGTCATGTTTTACTTTTCACATATCTTTTCCTTGCTCCTTTTTTAGACAGTTAATGGTGCCTGTCCTGATCCTAAAATTGACATTCCATAAAAAAATGAAAACATGTTCTAATATATCAAGACTTTGAAAACCATTTTGTTTTAAAGGTGTATAATTTACTGGTATTTGTAGGTTTGCATCGGTAGAACAGAGTTGCATTATATGTACATTTGCTGCTGCTGCTGCTAAGTCGAGTCAGTCGTGCCCGACTCTGTGCCACCCCACAGACGGAAGCCCACCAGGCTCTTCTGTCCCTGGGATTCTCTAGGCAAGAACACCGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGCTGACTCTTAGCAGCCCCATGGACTGTAGCCTACCAGGCTCCTCCGTCCATGGGATTTCCTAGGCAATATGTACATTTAACTTAATGCAAATGTAGCTGCCTATACTGGGAAAAAGAAAATGCATGAGAGAGATAAACAGAATTAATTTAAATTGTATAGATAGTAGTTTTTAACCATCCTGTCAGTTAGGAGTGTGAGATGAGGTACATAAATACAGTTTGGCTCAGTTGCTTTAGGTTTTGTCATAGAGGAAACCTCTCACTGTGCCAAGTTTTATTCTGTTTAAATACAGGTTGTTTTTAAGCGTTGCCTCTAACCTGTCTACATCTGGCCAAGCCCAGTCTCCTTCAGTGTAAAGGAAAAAACTAACTGTTGGGTTGGACAGTGTTTACTGAACTTTATGGTTAGTTTAACAAGGTGTTTTTCAAGAATAATTTTGATGGTGTGTGATTTTTGCCTTAGACCATAGAAACTAATCCCCATGTAACGTGCACCACCAGCATACATATGTTCGTTTTTTTGGTCACAAATTACAAGAGAAGTCACAAAATAAGCAAAAGCTGAGGCTCACGGGAATCTGGAATTGGACACAAGCACTGTGGCCAGGGATTCTAATCCTGACGGGAATGGGAATTAAACGTGTCTCATGCATGGTGGAGAGTGGGCACCGAGCTCTCAGGGAAAGGGGGCAGAAACAGGGACCTACCCAAGGCTAGGAGGTTGGCTAATAACAGGGCCTGCAATTGTATAATTGTATTGATAACAACCAGGCTTAGAGCTGTGAAACCCATAGGTCGGATCCAGAGCAGCCAGTGTAGAGGAACACCCAGGAGTAACCTGTACAGAAGTGTAATCTCGCATAGTCAGAGCACACAGAGGCATTTAGGATCATGAAGGCAGCCTAAGTTCCAACAAATGGCAGAGTTCACACCTGAGGAATCAGAGATAATGTAGAATGTGACTGAAGGAGACTTTAAAATAGGTATGTTTAAAATGTCCAAAGAGATAAAATATTAATATCCATGGAATGAGGAGGTGATTATTTTTAACTATACTGTATAAGTAAAAGAGCCATTTAGAAATACGGGAAATAAAGCATATGGTTATGGAAATAAAAAACTAAGTAGAGGGACTAAGTGGTAGCATTGGTATAGCTGGAGAAACAATCAGTGAATAGCAAAGCAAAACTGAAGAGTTCTCCCAGAATGCAAAGAGATAAAAATATGAGGAAAAAAAACTTAGAGGTTAAAAAATATGAAAGGTCAATGAGAAATTCCAACATACCTCTGAGAAGAGAGCATCATTCAAAGAGACAATAGCTGAGAATTTTCCAGAACTGAAGAAAGATAGGAGTCCTCAGAGTGAAAAAGCCTACTGTGTACTAGGAAGGGAAAATAAGATAACTTACATTTAAATATATCATGATGCAACTTTGCAAGTATCTAGGGCAAAGAATAAATATGCTAGCAGATGGAAAAGAGAAAAAATACATTGACAGGGCAGTTTTTATCAAAAATAGAAGACAAAAAGGCATATTAGCTTAAAATGCTGAAGGAAAATAAATATAAAACTAGAATTCTGTAACAAGCCAGTTATATGGTAGGGGGTGGGGGTGTTAAGAGGGTGTTCAAACAATTACACAGCAGTTGAAGATATGCACTCCTGTTTTTCAGCAATAGTATTTTTCTACCTAGAGCATTGTTTTCCAAGCTCTAAGTTTCAGTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCAACTCGTTGCGACCCCAGCACGCGGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACTCAGACTCACATCCATCGAGTCAGTGATGCCATTCAGCCATCTCATCCTCTGTTGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGTCTTTTCCAGTGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTAAGCTCTAAGTTTAGTAGGATGTAAAATCACTTAAAGGGCTGTAACTAGAATCTTAAAAATTAAATTGTACAGGAAGTACCATGTGTACAGGAAGTACAGTGATAAGGTACTTATATGTGACTGCTATTTCTTACTTTACATATACACACATATAAATATGCATGCCTCTTGTAGGATCTTTTCTTAGAAATGTAAGACATTTCTTGCTATGAGTCATAGTCAAAAATATTTGAAAGCTGCTACCCAAAAGATGCTTAGACAGGGACATAAGAATAAGGATGTTGCAGCATTGTTGTATTGAAAACTAGAAGCAGTTTAATTGTGATTCTAAATGCTGTGGAAAAGTTAAGAAGGTAGATCTCAAAAGCATTATATTGAATGAAAAGACAAGTTGTAGGATAATAGCTATGGTAATTTTTTAAAACAATACATTGTATTGTTTGTGGGTAAATATATATGCAAAAGTATAAAGGATGCCTCACCAAACCTCTTAAGAGCTTAGTTTTATCTTTTTTTTTTTTTTAAAGAAGATCATTTATACAGTATATATGTTGTAAATTATAGTTGACCTTTGAACAATGCAGGGGTTAGGGGTGCCAGCCCTCGAAAACACAACATGTAACATAATTGGCCCTTCACATAAGTGGTTCCGCATCCATAATTCCACATCCAAGTTTTCATCCAACTGTAGATGAGGTAGTACTGTGTTATTTACTATTGAAAAATATCCACATATAAGTGGACCTGTGTAGTTCAAACCCGTGCTGATCAAGGGTCAGCTGTATATACATCGGAGAAAGGACTAGACAAAACGATGACAGCTGATTCTGTCTGGTCAAAATGAGTGTTTGTTATTGTTTGTGTTGTCTGTACTTTGTAAACTTTGCAAACAAACTTATATTGAAAAAGCAACAATAGATTTCTACATCTGTAAATAGAATTCAAGTCAGTCAATATATTGCTTATTTTTTCTGTTGCAAACGGTAGTTACCACTCTGACATGTATTGTATATATACAGAAAAATACTGAAATGAATCATAGACGAAACAATCTAAGTCACTTGCCGTTTAACACAGGAGATGAGAGTCAGAGATTTTTAACCAGTAGTCACACATCAGGTTTGTAACTGAGACGCCCAGGTTCTTTACGCCTATAGAGTGTTAAGTCCCTGTCATGTTAGATAGTCATCTCAGTAGTTAGAGAGGAAATTTGTTTTTAGGTTTTCATGTTTACTGCTTAGCAGTGCTATGAAAAATAGCCGGATGCATGGCATCAGTCTCCTCAATCTATTTTTATGTCATTGGAGACAGAGATAATATAAAACATACACAAAACTATGTAAGTTCTTCTGAGCTTGACATGTTTAAGTTTATCCATTGTAGGAGGGCAGACCTGGGAAAATTCTCACAATGAAGCTTCTGCTGAATAGGAAATGAAAGGAATTCATTTTGAAATGTTAAAACTCATAGTTAACTATTTCATGAGCAAGTCGAGGTACAGGGCAGTTTATAATTATTTATGAACTTCTGGTAAATGTTGTCTTTCAAAGAGGTGTATTTTATTTAGGGAAGAAGTCTCGACTGTCCATGCGCCAAACAACTGTTTTAAATACAATTATAGTCTTTATACTTTTGTCAAGAGAGTCTCTTAACTTGATGCTTTTTTATTCTGACTTCTCCATACATTGTCTTCCTCCTAG
Seq C2 exon
AACAAAATGTGCATGTCTTCAACTGACAGCAAGGAATGCCAAGACTTGCCCCTTGTCAAATAATAAAATAACCACTGGATATAAATATAAAAGACTAGAGAGACAGATACCTACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329:ENSBTAT00000009641:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142914=MBD=WD(100=39.2),PF0503311=Pre-SET=PU(49.6=30.2)
A:
NA
C2:
PF0503311=Pre-SET=FE(33.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development