RnoINT0133871 @ rn6
Intron Retention
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39725574-39728185:-
Coord C1 exon
chr15:39727625-39728185
Coord A exon
chr15:39725691-39727624
Coord C2 exon
chr15:39725574-39725690
Length
1934 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CCCCACTGCCTTTCTTTTAGAAA
3' ss Score
8.45
Exon sequences
Seq C1 exon
ATCTACAGGAAGAAAAGGATTCCTCCCTGTGAACAATAAAACTGAAGGTTCGGGGGAGAAGGAGCCCCCTTTGCATGCATCTTTCCATCACCATGTGTGCTCCAGTGCTTGCCTGAGGGAAGCGCCACTGTCCTTGAAGGGAGAAAACCCTCTGCAGCTGCCACTCAGATGTCACTTCCAGAGACGACATGCAAAGACAAACTCTCCCTCTGCTGCCCTCCATGTAAACTATAGAACGCCCTGCGGACGGAGTCTACGAAACATGGAGGAAGTTTTCCATTACCTGCTTGAAACGGAGTGTAACTTTTTATTCACAGACAACTTTTCTTTTAATACTTATGTTCAGTTAACTCGGAATCACCCAAAGCAAAATGAAGTTGTTTCTGATGTGGATATTAGTAATGGAGTGGAATCAGTGTCGATTTCTTTCTGTAATGAGGTTGACAATAGTAAACTCCCACAGTTTAAGTATAGGACGACAGTATGGCCCCGAGCATATCATCTGAACGTTTCCAGCATGTTTTCTGATTCATGTGACTGTTCTGAGGGCTGCATAGACAT
Seq A exon
GTGAGTAGAAAAACATGGCGTTTCAAGCAATCTTCTGACTATAGACACATTTCTCTAGTCCTACTGTGTTCCAGTTTGCCATTCTGTCTGTCTAAAACTAGTGGACACATTGTCTAAAATAGATGAAAAAGATACCCTGTCTCATAACTGCCCGAAATGGCAATTTGAAATTTAGTTTTTCTAAGGATGCTTCTAGGTACTGCCATAGTTACAATAGCCATTACAGTGCCATCGATGAGTGTACTTTAGGTACACTCTCCTCATCATCACAGAATCCTGTGTGCTAGGTGGTATATTTCTCTCACACAAGTAAGAAAGTAGGTCTTAGAAATAAACTCAAAGGAGTCACAGAGCAGACAAATTGGAGAAGCAATATTTGAACCTTTGTTCCTAATTTCTTTGTCCTTGTTATATTTTACTTTTATAAATTAAGTGTTATTCCTGGCTGATTTTTTGGAATGTAAGTGTGCTTGCAACTACTATTGTTTAACAACTGCACTGATATTCCATCAAGAATATGACAACATGCTCTGCTACATCAAGATCTTGAGAAACATTTTCTTTTAAAGATGCGTAATGCATATGCATTTGTAGGTTTACAGATATTTGGGTAGATTTGTGTTATATGTATAGTTGACAGTGCAAATTTAGCTATACTAAGCAAAAGAAAATGGGAATTTATTTTAATATAGTTATTCCCTCATCTGAGGGGTATATTCAAGGACCCCTGAATGCTTAACATCTTGTATTAGTACCAAAGTCTGTCTATTTGTGCTTTTCCCACATACTCTAAAGCATTGTAGGTATGACACTTGATCTGTAATCAATATGGCTGTCAGTAGACTAACTGGCTGGTAAGGAGTTTCTTCCTTTACAGAGGCTTCAGTTCCTGTGGCCAACTGTAGTCCAAAAATATTGTCCTGGACAGATGTTTTAGAGGTTAAGAGCAATGACTGCTCTTCCAGAGGACCCAGGTTCAGTGCTCAACACCCACATGGTAATTCACATCCAGAGCCAAGGGAACTGCTGCCTTCCCTAGGCAACAGCTATGAGGCATGCAAGTGGTGCACAGACGTGCATGCAGACAAGATAGCCATGTACATTAATAATAATAATTATAAAACATATGCGCTTAAAGCATAAGTATTACACTCCATGCTGTTTGGAGTTGTGTGATGGAACGCCCCACTCCACTCCTTCTCGAATGTGAATCATCTCTGCCCATACTATTCACAATTTGCCAGTTAGTCACTTAATAGCCACATTGATTATCAGGTCAAGTGTTGTACTTGGCAGTACATTCTAGTAAGGTTTATTTTACTTAATAATGGACTCAAAGGACACAAATAATGATATATATATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCCCAAAGCACGTAAGGAGATATTAATTCTGATATCATATGGTAGTGTTTCAGTTTGTGGGGAAAACACAAATAAATAGACCTTGGTACTGATACAGGATGTTAAGCATTCTGGAGTCCTTGAATATACCTCAGATCATAAGGGAATATTAAAATAATCTGTGGTAGAAGAGCATAGCTAAGACTATCAGGAAATGAGCTGATGAAAGCATTCATTTTGAAGATAAAAATCCATATAATGAAATGTCTGTTTCACGGTCAGAGAGCTCAGTGCATTTTATGTTAGTTGTAATAAGCTTGTGGTTGGTGTTATTTCTCAGATAGGCCTATTGTCTTTAGAGAAGTTTCCATATACTCTTTGAGCAGAACCCTCTTATAAATAAAAGTCCACCATTTTTAATGTCATTTATGCTTTCACCGAGTCTCTTAACTTGGTGGCTTTTGTTTTTATTCTCACTTCTCTGTCCCCACTGCCTTTCTTTTAG
Seq C2 exon
AAAAAAGTGTGCATGTCTTCAGTTGACAGCAAAGAATGCCAAAGCATGTCCCTTGTCACCTGACGGAGAATGTACTGGATATAAATATAAAAGACTGCAGAGACTCATACCTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680:ENSRNOT00000036781:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142914=MBD=WD(100=38.8),PF0503311=Pre-SET=PU(49.1=29.8)
A:
NA
C2:
PF0503311=Pre-SET=FE(34.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTTGAAACGGAGTGTA
R:
CGTCAGGTGACAAGGGACATG
Band lengths:
345-2279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]