BtaINT0131971 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016328 | SFPQ
Description
splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:HGNC:10774]
Coordinates
chr3:111144828-111145395:+
Coord C1 exon
chr3:111144828-111144945
Coord A exon
chr3:111144946-111145346
Coord C2 exon
chr3:111145347-111145395
Length
401 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GATTTTTTTTTTAATTTCAGAGA
3' ss Score
8.37
Exon sequences
Seq C1 exon
GCAAGAGGAAGAACGACGTAGGAGGGAAGAAGAGATGATGATTCGTCAACGTGAGATGGAAGAACAGATGAGACGCCAAAGAGAGGAAAGTTATAGTCGGATGGGCTATATGGATCCA
Seq A exon
GTAAGTAAACTTTTGCAATGTAATCGGAGTTTTCTACAGAATTTGTGGATACCTAGGGTGCAGTTTATTCAGTTAAATGTCACTTTTCACATGGTAGCTATTCTACCTTTTTCTTTCTTTCTTTTTAACCCAAGTGTTTATGATTGATGGGCCTTGAGTTTTACCTTCTTGGGTGGGCCAAAAGATTTCATTGGTTAGGAAGAAGCTTGCTTTATAGGTTTTTTGATAATGGCATCTTTTAAAAAATCACCTAATTGGTTTTTTCCTTTAAGTTGAAAACAATTTTTGTTCAGCTTTGGAAATTCCTTGTTAGGGAATTTCCAAGTTAAGAATTACCAAGTTAAGAATGCTTGGTATGGGTTTAGTAGAAGTGTATGAAAGGATTTTTTTTTTAATTTCAG
Seq C2 exon
AGAGAAAGAGACATGAGAATGGGTGGTGGAGGAGCAATGAACATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016328:ENSBTAT00000021719:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]