HsaINT0148686 @ hg19
Intron Retention
Gene
ENSG00000116560 | SFPQ
Description
splicing factor proline/glutamine-rich [Source:HGNC Symbol;Acc:10774]
Coordinates
chr1:35652804-35653691:-
Coord C1 exon
chr1:35653574-35653691
Coord A exon
chr1:35652853-35653573
Coord C2 exon
chr1:35652804-35652852
Length
721 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
AAGGAATTTTTTTCTTGCAGCGG
3' ss Score
6.63
Exon sequences
Seq C1 exon
GCAAGAGGAGGAACGACGTAGAAGAGAGGAAGAGATGATGATTCGTCAACGTGAGATGGAAGAACAAATGAGGCGCCAAAGAGAGGAAAGTTACAGCCGAATGGGCTACATGGATCCA
Seq A exon
GTAAGTCAGCCTTTACTGCCTTCCAATTGGAGTTGTCTATAGAACTTGCAGGTACCTAGAAGGAATTACAGGAAATTTTAATATCAAATTACAGTTATTTTCTGCTTTTTTTCTAACAAAGTATATTATGTTTGATTTCCTTGTATGGGTCAGAGGATTTAATTGAATAGGAAGTTTTTTTGTGTTTTGTTTCTTGGTTTTTTTGTTTTGTTTTGTTTTTTTGTTTGTTTGGTTTTTTTTTTGGAGAGAGTTTTGCTCTTGTCACCCAGGCTGGAGTGCAGTGGCTTGATCTTGGCTCACTGCAGCATCTGCCTTCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCTTGAGTAGGTGGGATTACAAGTGCCTGCCATCAGGCTCGGCTAATTTTTGTATTTTTAGTAGAAATGGCGTTTCGCCTTGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCTGCCTCGGCCTTCCAAAGTGCTGTGATTACAGGCGTGAGCCACTGCTCCCGGCCTTGAATAGGAAGTTTTGTAGGTCTTTGGATAATTGAGTCTAACTTAGTTTTCAGAATATTGATTTCAAAAATAATTCACATGATGAACTTTTGAACTTTACCATGTTTTTTATTTAACTCTTGAAAATTTCTCAGTTCTTAAGAATGCTTGCTGTGGGTATAGTGCAGGTATATTGAAAGGAATTTTTTTCTTGCAG
Seq C2 exon
CGGGAAAGAGACATGCGAATGGGTGGCGGAGGAGCAATGAACATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116560-SFPQ:NM_005066:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)