DreINT0133805 @ danRer10
Intron Retention
Gene
ENSDARG00000011564 | sfpq
Description
splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
Coordinates
chr19:40443978-40444240:+
Coord C1 exon
chr19:40443978-40444092
Coord A exon
chr19:40444093-40444191
Coord C2 exon
chr19:40444192-40444240
Length
99 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TTTACCTGTTTTTTCATTAGAGA
3' ss Score
8.4
Exon sequences
Seq C1 exon
GCAAGAAGAGGAACGTCGTAGGAGAGAGGAGGAGATGATGCGGCAGAGGGAAATCGAAGAACAATTGAGGCGCAAACGCGAGGAATCTTACAGAATGAACAACTTCATGGATAAT
Seq A exon
GTAAGTAATGCATCTAGTAAACTCTTTAAATACGAGGTTGGTTGAGTACTTACAAATGTTTTTTATTTATTTTTATTTTTTTACCTGTTTTTTCATTAG
Seq C2 exon
AGAGACAGGGAGATGAGAATGAACACAAGTGGAGGCATGGGATTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011564:ENSDART00000017359:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGAGGAACGTCGTAGG
R:
CAGACAATCCCATGCCTCCAC
Band lengths:
164-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]