RnoINT0134162 @ rn6
Intron Retention
Gene
ENSRNOG00000058461 | Sfpq
Description
splicing factor proline and glutamine rich [Source:RGD Symbol;Acc:727923]
Coordinates
chr5:145084983-145085586:+
Coord C1 exon
chr5:145084983-145085100
Coord A exon
chr5:145085101-145085537
Coord C2 exon
chr5:145085538-145085586
Length
437 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TTTGTGTTTTCCCTCCCCAGAGA
3' ss Score
11.01
Exon sequences
Seq C1 exon
GCAAGAGGAGGAACGGCGTAGAAGAGAGGAAGAGATGATGATTCGCCAACGTGAGATGGAAGAACAAATGAGACGCCAACGAGAAGAAAGCTACAGCAGGATGGGCTACATGGATCCA
Seq A exon
GTAAGTTTTGTGATGCAGTAGATTAGCATACCATTTATTCATTGTAAATGTACTAGTGTGGCTGTTTTCTTCTGTTTTCTTTGTATGTACAAACTGCTACCAGATCTTCCTGGATCAAATATCACGGAGCTTGTTTGTTTTCATGGTCTAACCAGCTTTCAGGACACTGTATGCCACAATGAAGTAGAAAAACATACATTTTGAGCCTTGAGTTACTTTGGTTTTTGAGGCAAAGTCTTTCTTTAAGCCTTGACTGGCCTGGAATTCTATGTACATGTTGGTGTTAAACAGATAAGCCTACTTCTGCCTCCCAAATGATTGAATCAAAAGTGAATCCCACTGGATAAATATTTTTGTGTTCAATTTTTTTCTACTTGTGTACATGGTGGTAGGTTTCATGTATGATTGAAGTTTATTTTTGTGTTTTCCCTCCCCAG
Seq C2 exon
AGAGAAAGAGACATGAGAATGGGTGGTGGTGGAACAATGAACATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058461:ENSRNOT00000084202:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]