HsaINT0148686 @ hg38
Intron Retention
Gene
ENSG00000116560 | SFPQ
Description
splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
Coordinates
chr1:35187203-35188090:-
Coord C1 exon
chr1:35187973-35188090
Coord A exon
chr1:35187252-35187972
Coord C2 exon
chr1:35187203-35187251
Length
721 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
AAGGAATTTTTTTCTTGCAGCGG
3' ss Score
6.63
Exon sequences
Seq C1 exon
GCAAGAGGAGGAACGACGTAGAAGAGAGGAAGAGATGATGATTCGTCAACGTGAGATGGAAGAACAAATGAGGCGCCAAAGAGAGGAAAGTTACAGCCGAATGGGCTACATGGATCCA
Seq A exon
GTAAGTCAGCCTTTACTGCCTTCCAATTGGAGTTGTCTATAGAACTTGCAGGTACCTAGAAGGAATTACAGGAAATTTTAATATCAAATTACAGTTATTTTCTGCTTTTTTTCTAACAAAGTATATTATGTTTGATTTCCTTGTATGGGTCAGAGGATTTAATTGAATAGGAAGTTTTTTTGTGTTTTGTTTCTTGGTTTTTTTGTTTTGTTTTGTTTTTTTGTTTGTTTGGTTTTTTTTTTGGAGAGAGTTTTGCTCTTGTCACCCAGGCTGGAGTGCAGTGGCTTGATCTTGGCTCACTGCAGCATCTGCCTTCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCTTGAGTAGGTGGGATTACAAGTGCCTGCCATCAGGCTCGGCTAATTTTTGTATTTTTAGTAGAAATGGCGTTTCGCCTTGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCTGCCTCGGCCTTCCAAAGTGCTGTGATTACAGGCGTGAGCCACTGCTCCCGGCCTTGAATAGGAAGTTTTGTAGGTCTTTGGATAATTGAGTCTAACTTAGTTTTCAGAATATTGATTTCAAAAATAATTCACATGATGAACTTTTGAACTTTACCATGTTTTTTATTTAACTCTTGAAAATTTCTCAGTTCTTAAGAATGCTTGCTGTGGGTATAGTGCAGGTATATTGAAAGGAATTTTTTTCTTGCAG
Seq C2 exon
CGGGAAAGAGACATGCGAATGGGTGGCGGAGGAGCAATGAACATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116560:ENST00000357214:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains