GgaINT0136764 @ galGal3
Intron Retention
Gene
ENSGALG00000002514 | Q91017_CHICK
Description
NA
Coordinates
chr23:4718157-4718539:+
Coord C1 exon
chr23:4718157-4718274
Coord A exon
chr23:4718275-4718490
Coord C2 exon
chr23:4718491-4718539
Length
216 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
AAGTTGTTTCTTCTATGCAGAGG
3' ss Score
5.86
Exon sequences
Seq C1 exon
GCAGGAGGAGGAGCGTCGCAGACGGGAGGAGGAAATGATGATCCGTCAGCGAGAAATGGAAGAACAGATGAGAAGGCAGAGGGAAGAGAATTATAGTAGAATGGGTTATATGGATCCC
Seq A exon
GTAAGTGAAACCACTCTGTTTTCTGGAATTGTTTACCATGTTCAGAGGTTTCCAGAATTCTTGCATGTTGTTGAGGTTGTGTTTTGCTTCCTTTAGGTTAGAGGTGGTATCTTTGTGTAATTGAGATGGTAGTGGTTGGCTGTGCACATGCTTTGTCTCCTGAGAGGTACGGGTCTCAGTAATAGCTCTGTGCTAAAAGTTGTTTCTTCTATGCAG
Seq C2 exon
AGGGAGAGAGACATGAGAATGGGTGGTGCCACCACAATGAACATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002514:ENSGALT00000003963:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF116443=DUF3256=PD(1.2=4.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGAGGAGCGTCGC
R:
TCCCATGTTCATTGTGGTGGC
Band lengths:
165-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]