BtaINT0134531 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016762 | SLC25A12
Description
Bos taurus solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (SLC25A12), mRNA. [Source:RefSeq mRNA;Acc:NM_001101194]
Coordinates
chr2:24774678-24777204:+
Coord C1 exon
chr2:24774678-24774768
Coord A exon
chr2:24774769-24776106
Coord C2 exon
chr2:24776107-24777204
Length
1338 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TTGACTTTTCCTATCAACAGCAA
3' ss Score
8.27
Exon sequences
Seq C1 exon
CTCGAGTGTTTCGATCCTCTCCCCAGTTTGGTGTTACTTTGGTCACCTATGAACTTCTCCAGCGGTGGTTTTACATTGATTTTGGAGGCCT
Seq A exon
GTAAGTGCAACTTTGCAAACTCCCTTATAAAGAAAGCACCAAAACCCCAGACAGGTGTTTGTTCAGCTTATAAAGGCATTTTTGGGATAGCAACCGACAGGACAGAGGACCCTACAGGAGCAATACGTTTAAAACAAACCATGGGCCTAAGATTCTTCACTGTTAGAGGAGTAAGACTTGGACAGGGTGACCCCATACATAGCATTAAGCAACTGCTTGGGGAAAGTTTAGAGAGGAAGCAAATTAAAATGTAATATGAATAGTTGCCTTTTTAGTGTAAGCAGATACTGAGCTTCATGGATTTAGGTCCTTATTTGGCCTTTTTACCAGAAGTAATATAAATTTGTGTTAGTTACACTTTTGTAAACTTTTGAAAACTCATTCAAGCCCTTTCACACCCTCATGATTTCATTATTCACCATAATTTATTATTAGATAGATTTAGAAGTTCTTAGAACTAATTCTCTGCAAAAAAAAAAAAAAAGGTTCAAAGACAGGTTATGCCCATGGACATAATCACTGGTGAGATTTAGGCCACAAATTGCGCCTTTTGACAGTTAGTACTTGAAGCTTTCACCATGGACAAGAGGAATCACTTGAATTTGCTGGGAGGGGAAGGTTGTACCCAAAGCAAGCAATTACCAGCTTTTCAGCAGAAGATCAAATTCTGTATCTGAGTCTTTACTGCATAAACCTATGAATTCTTTTCCTGCTCATAAGCCAGGTAGGGAGTTAGCTGTTGAACCAAGAAGTTGAGGGACTTATACAAAGAAAGTAAGGACAATCTCAGAGTTTCAGGCTTTTCAATACTTTTGCATTCTGGAAAAAGTAAGAATTATATTTACTTCTCTTTAAATAATTTTAGTAATAACCTTCGCGAGCTTATTACTTTAAAAGTTAGCTTTTAAAATTATGTCAAAATAAAAGAAAATGTAAATTTTCTGCAGTTAATTTATGCTTAGTGTAAAAAATTGGGAAAATAGAAAAATCATTCATAATCCTACTTCCCAGAGTGGTAATATATGAGTGTATTTCTTTCCAGTCTCTCTTTCTGTGGATCTACTTACGTGTATGAAATGGAGGCCATTTCTCTTCTAAATCAAATACGTGAATGTGTTGCTTTCAATGCAGCTATAAATCATGACTAGTGCAGCGTAACTGACAAGGAAATAATTGGACACTCTTCTTGGTGACACATGGGTCAGACTGAAAGTGTTCAGTGGTGTGTCGTCTTCATTTTTTTGGTTTGTTTTTTTGGAGTATAGTTGCTCCTCAGTGCCGTGTGTCTGCTGTTCATCAATCTTGAATACACTGACCATTGACTTTTCCTATCAACAG
Seq C2 exon
CAAACCCTCTGGCTCAGAACCAACACCTAAGTCACGCATCGCAGACCTTCCTCCTGCCAATCCTGATCACATCGGTGGATACAGACTCGCCACCGCCACTTTTGCTGGCATTGAGAACAAGTTTGGCCTTTATCTCCCCAAATTTAAACCTCCTAGTGTTGCTGTGGTTCAGCCAAAGGTGGCGGCGGCAGCTCAGTGATAAGACAACCATTCAGTGTGGCAAAATGGCGCCCTAGAAAGAGAAGCCTAGGAGAGCAGCCTTGTAATGTATCCAGTCAGCTGCATGGTGCTGACTGAGCTGAAGAATCAAATTATTCTTTCTATATGACATATACATATATTTGTTTATAAACTAATCATTTGCCCAGGAAAAAAAAAATTACAATGCAGTTTGAAGCTTTAGTTTTATGTGTTGAAATGTTTTCTAAGCCTTGGCATGAATTAGTGTTCTAGACTGCTTTGCACAGCTTGCACTTACAGCGACTGTACATATTGTACATCTTTGTACAGAGACATCTTGGCACCTCATCCCAACAAATCTCATTTATAGAATGTAATGCAGTTCTGAGTGGCTTGAAATGTACAGAATGTTTTGAAAGTGTTTTATTAAGAATCACACGAAAATAAATGTATTAAAATTAAATTCATTCTTTTATTGGTGACTTATGGAAATAATGCATCAAATTGGATGTAATTAATTCCTAGCTTGTTTTCCGTTCTGGAGTAGAAAGGTATTTGCTGATAAGAGGCATAATGAGACCAAGTGCTGACACCATTGAATAAGAGACCCTTTGCAACAGATGCATGCCAGTGGATGCCGGAGGACCAGGCTAACGAACTGCGTGCGCTGGTGTTTCCATTTGTATTTCACGTGTGTATAGATTCTCCTCTGTTCATCAACCAAAAGGCATTTCCTAGGCGGCGCCTCTCCTGTCAGTGCGCATATAGCAGGGATGTCTCCAGCATTACTGGCTTAGTTTTTGCCTTCCTCGGACACAGCAAGGCAAGGGCCTAGCTTTCAAAAGAGTAAAGAATACTTTGGCAATTTTCATTCGTATGGATATGATTCCAATCAAAAATAAAATGCACACCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016762:ENSBTAT00000022292:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(28.1=87.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTCCCCAGTTTGGTGTT
R:
TACAAGGCTGCTCTCCTAGGC
Band lengths:
342-1680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]