MmuINT0145461 @ mm9
Intron Retention
Gene
ENSMUSG00000027010 | Slc25a12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:MGI Symbol;Acc:MGI:1926080]
Coordinates
chr2:71112352-71114579:-
Coord C1 exon
chr2:71114489-71114579
Coord A exon
chr2:71113411-71114488
Coord C2 exon
chr2:71112352-71113410
Length
1078 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CTGCTTTTTCCTGTTCACAGCAA
3' ss Score
8.92
Exon sequences
Seq C1 exon
CTCGGGTGTTTCGATCCTCACCTCAGTTTGGTGTCACTCTGGTTACCTACGAGCTTCTGCAGCGGTGGTTTTACATAGATTTTGGAGGCCT
Seq A exon
GTAAGTACAGCTACTTCTCTTCACAAAGTCACCAAATCCACATACGTGTTTGTTCTGTTTATAGAGCCACTTTGGGAATGCTGAGAAACGGGACACAGTGGGGTTCTTTAAGACCAATGCATGGAAAGCAATGGGCTGTAAAGCCTTCCACATTAAGAGAGGCAAATCACTGTTAGTTGGATTATTTAATATGACCAGAAACAACCTAAGTGTGTACTAGTCACACTCCTGTGATTGCTCCTCATCGTTTTTACATTTAGGAGATCTCATTGCTTCCCATCACTTAGTACCTAGATGTTCACACAGCTAGTTCACACACCGGTTTCCAAGAGAGGTTACCCAACGAGTCAACCATTGTAGAGTGCAGGCCCCAAACTGAGCTGCTCCAAATGCAGCACACAAAGCTTCCCCTGGGGAGACAAGCAGTTGCTTGCTGAGTCTGCAGGGAAGTTGTACCCAAAGCAAGCGAGCAATTATTAACTGTTGGGCAGAAGCCTGGGCACTGCGTGTCTTTATGTCATAACCCTGTGATCCTGCTGAAAGCCTCAGTAGGGGAATAGCTGCTGATCCAAGTAGTGGAGCGACCAGCATACGGAAAAGATGCAAGGACAGCAATTTTCTCATCCCAGCGTACAAATACTGTGTCTTGAGAGATTGTAGAAGCAAGAACTAAATTTGTTTCTCTTTTGGTGATAAGCATTATGAGCCCATTATTCAAGAAGCTTTAAAATTAAATCAATACATATACCTTTACATTTCATGTATGCTTCCTGCATAGTAATAGAAAATAGAAAAATCTACAAATAGCCAGCTTCCCAAAGACTATTACTAATGGAGTGCATTTTCTCTTCCGTTTATTTTTCTGCCCTCAAGTCTGCTCATAAGCAGTGGGGGTGGGGCCGTTTGTCTTCTCTATGACGTATGTGAAAGCAATGCTGTGGTGACGCTGGATATCATGATTGATGCAGGAGACATGGAGAGAGCTGAGAGAGCCTTCTCCATGGGGTGTGGCTGTCACAGACCCCGCTCAAAGTGTAAGCCCTGAGATCCCTAACGGTCTGCTTTTTCCTGTTCACAG
Seq C2 exon
CAAACCTTCTGGCTCAGAACCAACGCCAAAGTCCCGCATCGCAGACCTCCCTCCTGCCAACCCCGATCACATCGGTGGCTACAGACTTGCCACGGCCACTTTCGCTGGCATTGAAAACAAGTTTGGCCTTTACCTCCCCAAGTTTAAGTCTCCTAGCGTAGCTGTGGCTCAGCCCAAGGCGGCAGCAGCAGCCCAATGACATAGCAAGTACAGACCGAGGCCCAGGAGAACGGGCGGTACCGTGTCCAGTCAGCTGCATGGTACTGTCAGCGCTGGGGTCAACCACTTTCTATACGACCTATACATGTATTGTTTATAAAGTGATCATACGCCCAGGGAGAGCCGCAGTGCAGTTTCAAGCTTTAGTCTTTACGTGTTGAAATGTTTTCTGAGCCTTGGCATGAATTACGTGTTCTAGACTCTGCTTCGCACAGCTTGTACCTACAGTGACTGTACATATTGTACATCTTTGTACAGAGACACCTCGGCACCTCATCCCAACAAATCACGTTTATAAACATGAAACGCTGTTCTGAGTGGCTTGAACTGTACAGAAGGTTTTGAAAGTGTTTTATTATGAATCATGTAAGAATAAATGTACTAAAGTTAAATTCATTCTCCTCCTGATGACTTATGGAAATCAAGCAGCCATGTTTGAATGTATCCAGTTTCAGTTTGTTTTCCATTCGCGACTAGGAAGGTATTTGCTGATACAAGGCAGAGCGAAACTTAATGCTCACCACATTAAATAAGAAACGCGTGGGAAGGGTGCTTGCCCGTGGATGCCAGAGGATGAGCCGGTGACTCACGGGCTGCTGTGTTTCCAGTCGTTTGTAGCTGAGTGTAATCCTCCTGTCAGCTGGAAGCAGCTCCTCATGCGCGCGCGCACACACACACACACACACACACACACACACACACACACACACACACACACGAACGGGATGGGCTCCAGCAAGGCTCGCTTAGTTCTGCTTTTCTCCTATGCAGCAAGGTCAAGGTCAGGATGTTGCAAGAGTAAAGTTTGGAAGTTTCCCTTCGTAAAGTATGATACGAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027010-Slc25a12:NM_172436:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(28.4=87.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGGTGTTTCGATCCTCAC
R:
CAGTACCATGCAGCTGACTGG
Band lengths:
357-1435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: