RnoINT0136812 @ rn6
Intron Retention
Gene
ENSRNOG00000022922 | Slc25a12
Description
solute carrier family 25 member 12 [Source:RGD Symbol;Acc:1305181]
Coordinates
chr3:57882370-57883748:-
Coord C1 exon
chr3:57883658-57883748
Coord A exon
chr3:57882569-57883657
Coord C2 exon
chr3:57882370-57882568
Length
1089 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TTGCTTTTTCCTGTCCACAGGAA
3' ss Score
12.35
Exon sequences
Seq C1 exon
CTCGAGTGTTCCGGTCCTCGCCTCAGTTTGGTGTCACTCTGGTTACCTACGAGCTTCTGCAGCGGTGGTTTTACATAGATTTTGGAGGCCT
Seq A exon
GTAAGTACAGCTACTTCTCCTGAGAGAGACACCGAACCCAAACACGCGCTTGTTCTGTTTACAGAGCTACTTTGGGAATGCTGAGAGGTGGGACACAAGCGGGTCCTTTAAGACCAGCGCATGGAAAGCAATGGGCTTTAAAGGCTTACGTGTTAAGAGAGGCAAATCATTATTACTTGGATTATTTAATATGACCAGAAACAATCTAAATGTGAACTAGTCACACTTCCGTGACTGCTTTTCACTGTTCTTACACGTGTTGAGAGCTCATTGCTTCCCATTGCTTTGTACATAGATGCTCACGCAACCAGTTCACACACACACACACACACACACACACACACTGTTTCCAAGAGAGATTACCCAACAAGTCAGTCATTGTAGGGTACAGGCCCCAAACTGAGCTGTTCCAAACTCAGCACTCAAAGCTTACCCTGGGGCGACAAGCAGTTGCTTGTCGAGTCTGCAGGAAAGTTGTTCCAAAGCCAGCAAGCAGTCATTAGCTGTCGGGCAGAAGCCTGGGTACTGCTTGTGTGATGTCACAACCCTGTGAACCTCTCTCCTGCTGAAAGCCTCCGTAGGGAAATAGCTGCTGATCCAGGTAGTGGAGGGGCCAGCATATAGAAGAGATGTAAAAACAGCTACCCCACTGTACAAATACCGTGTTTTCAGAGATTGTAGAAGCAAGAACTAAATTTGTTTCTCTTCTGGTGATAAACTTTATGAGCCCACTATTTAAGAAGCTTTCAAATCAAATCAATACATTTCACACATGTTTCCTGAATAAGACTAGAAAACAGAAAAGCCCACGAATAGCCAGCTTCCCAAAGACTGTTACAAATTGAGTTCATGTTCTCTTCCGGTTTTTTGTTTTTTTTCTGCCTGCAAGTCTGCTCATGTATGTGCATAAGCACCGGGGCTGGGGCTATGAAAGCAATGTCCTGGTGAGGGGTGGATATCATGGTTGATGCAGGAGACACGGAGAGACCTGACAGAGCCTTCTTCATGGTGCGTGGGTGCTCAAAGTGTCAACTGCCTTCGTCAGCCCTGAAGTCGCTAACGGTCTACCTTGCTTTTTCCTGTCCACAG
Seq C2 exon
GAAACCTTCTGGCTCAGAACCAACACCAAAGTCACGCATCGCAGACCTCCCTCCTGCCAACCCGGACCACATCGGCGGCTACAGACTTGCCACAGCCACTTTCGCTGGCATCGAAAACAAGTTTGGCCTTTACCTCCCCAAGTTTAAGTCTCCTGGCGTAGCTGCGGCTCAGCCCAAGGTGGCGGCAGCAGCTCAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022922:ENSRNOT00000036728:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(28.1=87.1)
A:
NO
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGTGTTCCGGTCCTCG
R:
TCATTGAGCTGCTGCCGC
Band lengths:
290-1379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]