GgaINT0049680 @ galGal3
Intron Retention
Gene
ENSGALG00000009545 | F1P3D8_CHICK
Description
NA
Coordinates
chr7:19384463-19385051:+
Coord C1 exon
chr7:19384463-19384553
Coord A exon
chr7:19384554-19384944
Coord C2 exon
chr7:19384945-19385051
Length
391 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CATTTTCTTCCTTCAAACAGCAA
3' ss Score
8.58
Exon sequences
Seq C1 exon
CTCGAGTGTTCAGATCCTCGCCCCAGTTTGGTGTTACTTTGGTCACTTACGAACTTCTGCAGAGGTGGTTTTATGTCGATTTTGGAGGCCT
Seq A exon
GTAAGTCAAACATTTGCTTTTTAACTTGCAGTAAGTATTTGCAAAGATCAAAAATCTTACTTTTTTCAAGCACGGGACCACTTAAACTCGGTGGTTTTGAGCAGCAGTTGTAGTATGAGCCAAACAAGCTCCTCGTCCTTTGGTAATTAATAGAGTGGAGCTTAATTATATGCTACTTCTAGACAGGTGAAGAGATTAAAAAAAATACGTATTTTAATACATTACATAAAATTTGTCTTTCCAGTGTAGCAAGATATTTTGTCCTTCTTACCTGTGCCATAGGAAGTTAAAAAGTTGGTCTCAGTTGCCCCTGAAGCAGCGCTGTGAACCATCCCCACCTGACTATTTTTAAATAGTGGAAAAACTTGTTTCATTTTCTTCCTTCAAACAG
Seq C2 exon
CAAGCCTTCTGGATCAGAACCTACACCGAAAACCCGAATTTCAGATCTTCCTCCTGTTAACCCCGAACACATAGGCGGATACAGACTTGCTACAGCTACATTTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545:ENSGALT00000015535:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.640
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(27.8=87.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGTGTTCAGATCCTCGC
R:
CGGCAAATGTAGCTGTAGCAA
Band lengths:
198-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]