DreINT0149871 @ danRer10
Intron Retention
Gene
ENSDARG00000102362 | slc25a12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:ZFIN;Acc:ZDB-GENE-031006-11]
Coordinates
chr6:3800499-3803019:-
Coord C1 exon
chr6:3802929-3803019
Coord A exon
chr6:3801406-3802928
Coord C2 exon
chr6:3800499-3801405
Length
1523 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CGCTTCTCTTCTCATTCCAGTCG
3' ss Score
8.75
Exon sequences
Seq C1 exon
CTCGTGTTTTCCGCTCGTCTCCTCAGTTCGCTGTGACTCTGCTGACCTACGAGCTCCTGCAGCGATGGTTATACGTTGACTTCGGAGGACA
Seq A exon
GTAAGTGCTAATCAGACGTTTCTCACAGACGTACGATCTACATTTCTCACAAGGAAATACAGTTGAAAACACAATTATTAGTCCTACTGTAAAATAATAATTGTTTTTTCTTCCAAGTGATGTTTAAATAGAGCAAGGCAATTTTTTCCTGTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGCCAGTGCTGATGATATGGCATTTAAACAAAGTAATAATCAATTTATTCAGTATTTTTACATTTGTAATTAAACTTTTTCTCAGAAGTTCTAAATGAAGAAAAATAATAACATATAAACGAGCACATTTTTTCGTTTTTATACTTAATTATTTAAAGAGGAAATAGTCATTTCCATATACATTAATAGATTTTTTTTATTGGATTTACAGAAAAGCTACTACACCTATTGTGTAATATATCATCAGGATATGAGATGACTTGTATTGTGAAATGTGTTTTTGAAATGTATTTCTGCCTGTTTCACACCGCACGCACGAGCAGAGCATGCGCTGCGTATATGGAGAGCAGAGGCAGTGCCACAGGCGTTTGCCTTTCACACCAGCTGCATCTGCAGTCTGGGTCGGCGGCTGTTGCACAGATCAGTCTATCTTCATATATTCTATCTTCTTACCTATATATATATATATATATATATATATATATATATATATATATATATATACATATATATATATATATACATACATACACAGTTGTAGTCAGAATTATTAGCCCCCTGGATTATTAGACCCCCTGTTTATTTTTTCTCCAGTTTCTGTTTAATGGAAAGATTTTTTTAACACATTTCTAAACATAATAGTTTTAATAACTGATTTATTTTCTCTTTGCCATGATGACAGTAAATAATATTGTACTAGATATTTTTCAAGACACTTCTATACAGCTTAAAGTGACATTTAAAGGCTTAACTAGGTTAACTAGGCAGGTTAGGGTAATTAGTCAATTTATTTTATAATGATGGTTTGTTCTCTAGACTATCAAAAAAAAATTAAGCTTAAAGGGACTAATAAATTTGACCTTAAAATAGTTTTTAAAAAATTAAAAACTGCTTTTATTCTACAAAGCAAAATAAAAACAAAACAACTAAGGCTTTCTCTAGAACAAAAAATATCATCAGGGCATCCACTGCGTTAAACATATGCTGGATAAGTTATTTTATCATTTTATTTATTTTTTTTTTTTAGTTATTTTATCAAATTATCAATGCAATGGCACTGTAATTGAGCCCAAACTGCAAAAATAGACCAGCGCCGAAACTATCGCTGACATGCTGCTTCCGCTTGACATATGAAAGCTCTAATCTGTTAACATGGATGCTGAAAAAAACGTGCTGCTCACACTCTGCTGGCATGTGCGGTGTAAAACAGCCGTTAAAGGAGGTTAGTTTTGATATTACGGCTGCATGTCGAGTCTTTCTGCGGTCAGAAAAGTCTAACGCTTCTCTTCTCATTCCAG
Seq C2 exon
TCGTCCTGCTGGTTCTGAACCAACACCCAAATCTCGGATCTCTGAGCTTCCTCCGGTCAGCTCTGAGCATGTCGGTGGTTACCGTCTGGCAGCCGCCACATTTGCCGGCGTGGAGAACAAGTTCGGACTTCACCTGCCCAAGTTCAAATCCTCCGGCATCTCAACCATCCATCCCGAAACACCCAAGGAAACAGCCGGCGCTTCCTAAAACAACTCCTGCTCCGCTCTCCATGGCCTTGTCCTCCAGTGGCTGCATGCCTCCATCTCACAGTACATCTGCCTACACTCTTCACTCTTTCATTTCTTTCAGTTTCCAGGTGGGGGACATGGGGAAATTCAGCTCATTTTCAGGGTAACCCTCATCAGTGCCTCGGTTTTGATGAAGAACACTGGTCACAGGTCATAGTTAGTGTGTTTTCTGAAGCACAGGGTAGATTTGCCACACTGATCAAGACCTAAAGCGACACACGCGCTCAGTGTATTATCAAACAAGGGCTCTAGAGAAGTTCAGCAGCCACTGGCTAATGCTAAAACACCTAACATGAAACACTCCTGAGAGAAAAGCCTAGTGTTGGTTTTTTTTTGTTGTTGCTCTGCTCCCCGAGACGCACATCTTGCTGCTTTTTGAGTTTTATCCTGATGATTATGATGTATTGATGTGACCTAAGCATGCTGTTAGCGCTCTTCATTTGGCTTTGCGTAGCTTGCACATGTACTGTATATACATGTACATCTCAATCCACAGAGAGTCTCGCTCTCTGCGTCACACTGAGCGATGTACAGAGGTTTCAAAACTTGATCCACTGATCCCCAAAACAAAGTCATGATTGGTTTGAAACGTAGGAAATAATTTAAATGCATTCGTTCTTGTATTTTATGGAAAATAAATCAATACTGTTAAATTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102362:ENSDART00000167753:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.435
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(28.1=87.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCCGCTCGTCTCCTCAG
R:
CTGTGAGATGGAGGCATGCAG
Band lengths:
357-1880
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]