GgaINT0049680 @ galGal4
Intron Retention
Gene
ENSGALG00000009545 | SLC25A12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:HGNC Symbol;Acc:HGNC:10982]
Coordinates
chr7:17456598-17457269:+
Coord C1 exon
chr7:17456598-17456688
Coord A exon
chr7:17456689-17457079
Coord C2 exon
chr7:17457080-17457269
Length
391 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CATTTTCTTCCTTCAAACAGCAA
3' ss Score
8.58
Exon sequences
Seq C1 exon
CTCGAGTGTTCAGATCCTCGCCCCAGTTTGGTGTTACTTTGGTCACTTACGAACTTCTGCAGAGGTGGTTTTATGTCGATTTTGGAGGCCT
Seq A exon
GTAAGTCAAACATTTGCTTTTTAACTTGCAGTAAGTATTTGCAAAGATCAAAAATCTTACTTTTTTCAAGCACGGGACCACTTAAACTCGGTGGTTTTGAGCAGCAGTTGTAGTATGAGCCAAACAAGCTCCTCGTCCTTTGGTAATTAATAGAGTGGAGCTTAATTATATGCTACTTCTAGACAGGTGAAGAGATTAAAAAAAATACGTATTTTAATACATTACATAAAATTTGTCTTTCCAGTGTAGCAAGATATTTTGTCCTTCTTACCTGTGCCATAGGAAGTTAAAAAGTTGGTCTCAGTTGCCCCTGAAGCAGCGCTGTGAACCACCCCCACCTGACTATTTTTAAATAGTGGAAAAACTTGTTTCATTTTCTTCCTTCAAACAG
Seq C2 exon
CAAGCCTTCTGGATCAGAACCTACACCGAAAACCCGAATTTCAGATCTTCCTCCTGTTAACCCCGAACACATAGGCGGATACAGACTTGCTACAGCTACATTTGCCGGTATAGAAAATAAATTTGGTTTGTATCTTCCCAAGTTTCGATCTTCTGGCACTGTCTCAGCTCAACTGAAGAGCGGCAGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545:ENSGALT00000015535:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.222
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(27.8=87.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGTGTTCAGATCCTCGC
R:
GCTGCCGCTCTTCAGTTGAG
Band lengths:
278-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]