BtaINT0134537 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016762 | SLC25A12
Description
Bos taurus solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (SLC25A12), mRNA. [Source:RefSeq mRNA;Acc:NM_001101194]
Coordinates
chr2:24736405-24737294:+
Coord C1 exon
chr2:24736405-24736543
Coord A exon
chr2:24736544-24737200
Coord C2 exon
chr2:24737201-24737294
Length
657 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
AAGCATTTTTTTTCTTCCAGAGG
3' ss Score
6.96
Exon sequences
Seq C1 exon
GCAGCCGGAGGAAGTATCTCACACCAGGTTAGCTTCTCATACTTCAATGCATTTAACTCCTTACTGAATAACATGGAGCTTGTTCGTAAGATATATAGCACTCTAGCTGGCACAAGGAAAGATGTTGAAGTCACAAAGG
Seq A exon
GTAAGATTTTTAAAATACATATTGATGCAAATCTCAGCATTTTCACTTTTCTTTATCTAGGGTGTGAGGTTGATCTAGGTTTACTACTGTGAAGCCACATCTAGAAAGTGTGTATATTTCACTTGGACCATCATGGTCTCCAAAAATCCAGTTGGATTTAATGGGATGCCAAGGTCAGGAGTGGAAAAGTGGCTTTGACAGTTTTAAAAAGAACTGTGGCCCAGTCTGTCAAACAGGTCAGTGGCAACGGCTTCTTTGTATGAGGAAGGAGTGGCCACAGAAAGATGGGCAGGGCTACTCCTTTTGCTGAATTGTAGTGGGATGTTTTAAGTGACTGGAGAAGAGCCAGTTCTTTCATCTTGTAGCTCTGGAGACCAAAGCAAATAAACAAGATGAGGTTAGAGGAACCTAAAGCGATTGTTTTACCTCTGAAATTACTTTACCTGCTTTTACTGTTTTATCATCTTAACATTTTATCTTTTGCCGGTTTTCATATTTTTGTAGTTATTTCTATGTAGCTGAACTTAGATATTGAAATTCAGTTTTAGACTTTTAAAATAATACTAAAATGCTTTTAGCTTTCAGATAATAGTTAAGGTAGAAGTTTGTTATACGTTGAGAGTCTTTGAAGATTTTAAAGCATTTTTTTTCTTCCAG
Seq C2 exon
AGGAATTTGCCCAGAGTGCCATACGCTATGGACAAGTCACCCCACTAGAAATTGACATCCTGTACCAGCTTTCAGACTTATATAATGCTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016762:ENSBTAT00000022292:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGAAGTATCTCACACCAG
R:
AGCATTATATAAGTCTGAAAGCTGGT
Band lengths:
223-880
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]