DreINT0149875 @ danRer10
Intron Retention
Gene
ENSDARG00000102362 | slc25a12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:ZFIN;Acc:ZDB-GENE-031006-11]
Coordinates
chr6:3812744-3813059:-
Coord C1 exon
chr6:3812921-3813059
Coord A exon
chr6:3812838-3812920
Coord C2 exon
chr6:3812744-3812837
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
3' ss Seq
TCCTCTCTCTCCATTTGTAGAGG
3' ss Score
10.33
Exon sequences
Seq C1 exon
GCAGCAGGGGGCGGCACCTCTCACATGGTGAGCTTCTCCTACTTCAATGCCTTCAACTCTCTGCTTAACAACATGGAAATGATCCGTAAAATCTACAGCACTCTCGCTGGAAGTCGGAAGGACACGCTTGTCACTAAAG
Seq A exon
GTGCGGGCTGTCTGCAATAATTAGAAATATTATAATTAAATAATATGACATTAACATTTTCCTTCCTCTCTCTCCATTTGTAG
Seq C2 exon
AGGAGTTTGTTCATGCTGCAAACAAGTTTGGCCAAATTACCCCAATGGAAATCGACATCTTGTTCCAGCTATCAGGACTGCACTCCCAAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102362:ENSDART00000167753:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATGCCTTCAACTCTCTGCT
R:
GGGAGTGCAGTCCTGATAGCT
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]