MmuINT0145467 @ mm9
Intron Retention
Gene
ENSMUSG00000027010 | Slc25a12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:MGI Symbol;Acc:MGI:1926080]
Coordinates
chr2:71149520-71150620:-
Coord C1 exon
chr2:71150482-71150620
Coord A exon
chr2:71149614-71150481
Coord C2 exon
chr2:71149520-71149613
Length
868 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TTTGTTTCTTTGTCTTCCAGAGG
3' ss Score
10.19
Exon sequences
Seq C1 exon
GCTGCCGGAGGGGGTACCTCACACCAAGTTAGCTTCTCCTACTTCAACGCATTTAACTCCTTACTCAACAACATGGAGCTTGTTCGAAAGATCTATAGCACTTTAGCAGGCACGAGGAAAGATATTGAAGTCACCAAGG
Seq A exon
GTAAGCTTTTAAAAGTCAATTGGAATCCTCGAGTCCATGCTTTTGATCAGACAGATAGACCAATGTTTGTTCTTCATCAGATAGATGTGAGGCCCGCCACAGAACAAGGGGATCAGGAAAGTCAGTTGTCATTTGCATGTGCGTCTTTGACGCATGCGCAAGCTTCCTGTAGGCCTGGAAGCCCAGGTGCAGTGTTTAATGAGATACTGAGGTCAGGAATGCAAAAGTGCTTTTGACAGTTTTGAAAAGAGCCTTTGGCCCGATCTGTCAAACAGGTCAGTGGCGGTGGCAGTGGCAGTGGCAGTGTGGCGGCAGCTTGTTTGTACTGAAAATGAGTTGCCAGAGTTGCCTGCCGTGGAGAGAGGAGCAAGGCCACTGCTTTTGGATGAGTGGTGGCAGGGCATCTTGGGACCTCAGAGCAGCCTCCTTTATCTTTTAACTCTGGGGACCAGGGGGAGTGAGCAAGAGAAGCGAGAACTAGAGAGGCTCTGTTTTGATGTTGAGGTTGACCTGTTTCTGCAATTTCATCCTCTTAACATTTATTTTATCCCCAGCTTTCCAGAATGCAGTTATAGGCTGGATCTGAGCATTTAAATTTAGTTTTATATGTTTTAGAATAGTGCTAAAATCTCTCTCCCTCCCCAACCCCCACCCCCGAGTTTATATTAGACTCTTGAAATACTAACCTTTGCCAGGCAGTGGTGGCGCAGCACTTGGGAGGCAGAGGCATGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAGAAACCCTGTCTCGAAAAAAAACAAAAAAAGAAAAGAAAAGACTAACATTTGTTTCTTTGTCTTCCAG
Seq C2 exon
AGGAATTTGCCCAGAGCGCCATACGCTATGGACAGGTCACTCCACTAGAAATTGATATCTTGTACCAGCTTGCAGACCTATATAATGCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027010-Slc25a12:NM_172436:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACACCAAGTTAGCTTCTCC
R:
TGAGGCATTATATAGGTCTGCAAGC
Band lengths:
215-1083
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: