HsaINT0151637 @ hg38
Intron Retention
Gene
ENSG00000115840 | SLC25A12
Description
solute carrier family 25 member 12 [Source:HGNC Symbol;Acc:HGNC:10982]
Coordinates
chr2:171833963-171834865:-
Coord C1 exon
chr2:171834727-171834865
Coord A exon
chr2:171834057-171834726
Coord C2 exon
chr2:171833963-171834056
Length
670 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTTTTTTTTCTCTGTTCCAGAGG
3' ss Score
12
Exon sequences
Seq C1 exon
GCAGCTGGAGGAAGTATCTCACACCAGGTTAGCTTCTCCTACTTCAATGCATTTAACTCGTTACTGAATAACATGGAGCTTGTTCGTAAGATATATAGCACTCTAGCTGGCACAAGGAAAGATGTTGAAGTCACAAAGG
Seq A exon
GTAAGATTTTAAAATATACATAAATAAGAATCTCAGCATTTTCACTTTTCTTCACTGAGGCATGATGTTGATCTAAGCTTACCACTCTAAAGCCAGATCTAGAAAGTATGTTACCATGTGTATGTATGCTTTACTTGGGCTCCAAAAATCCAGGTGGATTTAATGTGATACTGAGGTCAGGAATGGAAAAGTGGCTTTGACAGTTTTGAAAAGAACCTTGACCCAATCTGTCAAACAGGTCAGTGGCAGTGTGGCAGCAGCTTGTTTGTACTAGGAAGGAGTTGCCACAGAAAGATGAGCAAGCCTACTCCTTTTGGTGAGTGGTATTAGGATGTTTTGAATGACTGGAGAACACCCACTTTTTTTGTATTATAACTCTGGAGAACAAAGTGAATAAGCAAGATAAGAGGAGATTCTAAAGAGATTGTTTTATTCTTGAAGTTAATTCATCTGTTTTGCTGTTTTATCATCTTAACATTTTATCTTTTACCAGCCTTCAGAAATGCATATTCTTGTATAGTTGAACTTAAATATTTAAATTCAATTTTAGATTTTAAAAATGATACTAAAATGCCTATAGCTTTCAGGTTATATTATAGTTGGTGAAGGTAGAACTTTGTTATATATTAAGAATCATTCAAGATTTTAACTTTTTTTTTCTCTGTTCCAG
Seq C2 exon
AGGAATTTGCCCAGAGTGCCATACGCTATGGACAAGTCACACCACTAGAAATTGATATTCTATATCAGCTTGCAGACTTATATAATGCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115840:ENST00000422440:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGGAGGAAGTATCTCAC
R:
TGAAGCATTATATAAGTCTGCAAGCT
Band lengths:
231-901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains