HsaINT0151637 @ hg19
Intron Retention
Gene
ENSG00000115840 | SLC25A12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:HGNC Symbol;Acc:10982]
Coordinates
chr2:172690473-172691375:-
Coord C1 exon
chr2:172691237-172691375
Coord A exon
chr2:172690567-172691236
Coord C2 exon
chr2:172690473-172690566
Length
670 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTTTTTTTTCTCTGTTCCAGAGG
3' ss Score
12
Exon sequences
Seq C1 exon
GCAGCTGGAGGAAGTATCTCACACCAGGTTAGCTTCTCCTACTTCAATGCATTTAACTCGTTACTGAATAACATGGAGCTTGTTCGTAAGATATATAGCACTCTAGCTGGCACAAGGAAAGATGTTGAAGTCACAAAGG
Seq A exon
GTAAGATTTTAAAATATACATAAATAAGAATCTCAGCATTTTCACTTTTCTTCACTGAGGCATGATGTTGATCTAAGCTTACCACTCTAAAGCCAGATCTAGAAAGTATGTTACCATGTGTATGTATGCTTTACTTGGGCTCCAAAAATCCAGGTGGATTTAATGTGATACTGAGGTCAGGAATGGAAAAGTGGCTTTGACAGTTTTGAAAAGAACCTTGACCCAATCTGTCAAACAGGTCAGTGGCAGTGTGGCAGCAGCTTGTTTGTACTAGGAAGGAGTTGCCACAGAAAGATGAGCAAGCCTACTCCTTTTGGTGAGTGGTATTAGGATGTTTTGAATGACTGGAGAACACCCACTTTTTTTGTATTATAACTCTGGAGAACAAAGTGAATAAGCAAGATAAGAGGAGATTCTAAAGAGATTGTTTTATTCTTGAAGTTAATTCATCTGTTTTGCTGTTTTATCATCTTAACATTTTATCTTTTACCAGCCTTCAGAAATGCATATTCTTGTATAGTTGAACTTAAATATTTAAATTCAATTTTAGATTTTAAAAATGATACTAAAATGCCTATAGCTTTCAGGTTATATTATAGTTGGTGAAGGTAGAACTTTGTTATATATTAAGAATCATTCAAGATTTTAACTTTTTTTTTCTCTGTTCCAG
Seq C2 exon
AGGAATTTGCCCAGAGTGCCATACGCTATGGACAAGTCACACCACTAGAAATTGATATTCTATATCAGCTTGCAGACTTATATAATGCTTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115840-SLC25A12:NM_003705:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(28.2=100)
A:
NA
C2:
PF134991=EF-hand_7=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGGAGGAAGTATCTCAC
R:
TGAAGCATTATATAAGTCTGCAAGCT
Band lengths:
231-901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)