RnoINT0136816 @ rn6
Intron Retention
Gene
ENSRNOG00000022922 | Slc25a12
Description
solute carrier family 25 member 12 [Source:RGD Symbol;Acc:1305181]
Coordinates
chr3:57917573-57918550:-
Coord C1 exon
chr3:57918412-57918550
Coord A exon
chr3:57917584-57918411
Coord C2 exon
chr3:57917573-57917583
Length
828 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
CTTTGGTTTCTTTCTGTTCGAGG
3' ss Score
-1.69
Exon sequences
Seq C1 exon
GCTGCTGGAGGGAGTACCTCACACCAAGTTAGCTTCTCCTACTTCAACGCGTTTAACTCCCTGCTCAACAATATGGAGCTGGTTCGCAAGATCTACAGCACTCTGGCCGGCACAAGGAAAGACATTGAAGTTACCAAGG
Seq A exon
GTAAGCTTTAAAAAGTTGATTGGAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCCCTTACCTAGGAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAGTTGAGTGGAATCTTTGAATCCGTGCTTTTCATCAGACAGATAGACCAACGTTTGTTTTTCATCAGATAGAGGCGAGGCCGGTCTAAGTCTGCCCCAGAACAAGGGGATCAGGAAAGTCAGTTGCCATGTGCATGTGCGTGTTTGACGCATGCGCACGCTTCATGTGGGCCTGGAACCCCAGGTGCAGTGTTTAATGAGATACTGAGGTCAGGAACGCAAAAGTGTTTTTGACAGTTTTGAAAAGAGCCTTGGCCCAGTCTGTCAAACAGGTCAGTGGCAGTGTGGCGGCAGCTTGTTTGTACTGAAAACGAGTTGCCTTGGAGAGAGGAGCAAGGCCACTGCTTTTGGGTGAGTGGTGGTAGGGCGTCTTGGGAGAGCTCAGAGCTTTACCTTTATCTTGTAACTCTGGAGACCAGAGGGAATGAGGGGCAAGAGAAGCGAGAATGAGAAAGGGATTGTTTTGTTGTTGAAGTTGATCTGTTTCTGCAATTTCGTCCTCTTAACATTTATTTTATCCCCAGCTTTACGGAATGCAGTTATAGGCTGAACCTGAGTATTTAAATTTAGTTTTACACGTTTAGAATAGTGCTAAAATCAATCCTTCCCCCCTTCCCCCTCCTCCCTCCCTTCCCCTCCCCCTCCCAGATTTTATATATTAACTCTTGAAATACTAACACTTTGGTTTCTTTCTGTTCG
Seq C2 exon
AGGAGTTTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022922:ENSRNOT00000036728:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]