BtaINT0134552 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003773 | SLC25A13
Description
solute carrier family 25 (aspartate/glutamate carrier), member 13 [Source:HGNC Symbol;Acc:HGNC:10983]
Coordinates
chr4:13434366-13435594:-
Coord C1 exon
chr4:13435456-13435594
Coord A exon
chr4:13434460-13435455
Coord C2 exon
chr4:13434366-13434459
Length
996 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TTAACTCTTTTTCCATACAGAGG
3' ss Score
7.9
Exon sequences
Seq C1 exon
GCTGCTGGAGGTACCACATCCCATCAAGTTAGTTTCTCCTATTTTAATGGATTTAACTCGCTCCTGAACAACATGGAACTCATTAGAAAGATCTACAGCACTCTGGCTGGCAACAGGAAAGATGTAGAGGTGACTAAGG
Seq A exon
GTGAGTGCGACTAAATCTGGATTCTTGCCTGCAAGTGTCTTGGTGAAGTATTATTAGAGGGAAGAAGACAACCAAAAGTTCATGTTACAGAGTTTTCTGTCCCTAGTTTTCTATCTCATTGACACATATTAACCATTTGGTACTTGTGTGTTCTCCACTCTGAAACAAATGAAACAATTTTCAGCACATTTTAAATAAATCCAAGGCTGTCTTTGAATGAGGGAACCATGTAAAGGTTCTCGTGTGTGCGCTAAGCCTCTTCAGTCGTGTCCCACTCTGTAATGCTATGGGCCGTAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAGGAATACTGGAGTGGGTTGCTGTTTCCTCCTCCAGGGGATCCTTCCTACCCAGGGATCAAAGCCATGTCTCTTGAGGTTGCCTGCACTGGTAAGCGGGTTCTTTATCACGAGTGCCATCTGGGAAGCCCCCAAAGTTTCTTAAATATTTTCAAATCTTAATGAAACCTAAACTGAATTGACATCCTCTCAAATGACCTTCGAAAGTACACAAGGAATTCTTAAAATTATACTGCTGACAGTGTGTGCTGATCGACAATCTTTGATCAAGATATCAGCATTTTAATGGGATTTTTTTTAAAAAAAACAAGAATTCCCTTTGGAATTCCACAGCTTCATTAATATTATATCCTGGGACCTATGTGTATGGAATTCCATATCTCCTTCCTGGTTTTCCCTGACTTACAATCTGAATGGCTTCCTGTGTCATTTATTCAAAGCCTTCAGGTGACACCAACCTTTTAAAGTCACTATTCGAGCAAGCATTCTGCACACTCTTTCCAGATGAATGAAAGAGTTCTTACCCCATTTGGATTGACTTGAATTCTGTGACTGTTAATAATAAAGTTTGGTGATGTTCGCTCATTCCAGTGCCTTGAGTTAATGCTGCATTTAGTGGCTATTCCTTCTTGAATCTTTCCCTTTTAACTCTTTTTCCATACAG
Seq C2 exon
AGGAGTTTGTTCTGGCAGCTCAGAAATTTGGTCAGGTTACACCCATGGAAGTTGACATCTTGTTTCAGTTAGCAGATTTATATGAGCCACGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003773:ENSBTAT00000004912:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGGAGGTACCACATC
R:
CCCCGTGGCTCATATAAATCTGC
Band lengths:
233-1229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]