HsaINT0151655 @ hg38
Intron Retention
Gene
ENSG00000004864 | SLC25A13
Description
solute carrier family 25 member 13 [Source:HGNC Symbol;Acc:HGNC:10983]
Coordinates
chr7:96189581-96191247:-
Coord C1 exon
chr7:96191109-96191247
Coord A exon
chr7:96189675-96191108
Coord C2 exon
chr7:96189581-96189674
Length
1434 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TTAACTTTTCTTCCATACAGAGG
3' ss Score
8.67
Exon sequences
Seq C1 exon
GCTGCTGGAGGTACCACATCCCATCAAGTTAGTTTCTCCTATTTTAATGGATTTAATTCGCTCCTTAACAACATGGAACTCATTAGAAAGATCTATAGCACTCTGGCTGGCACCAGGAAAGATGTTGAAGTGACTAAGG
Seq A exon
GTGAGTGAGAATATATCTGAATTCTAGCCTGCAAGTATTGTGGTGTATTATTATTAGGGTGAAGAAGGCAACTAGTACTTTATTATTTTTCTATCCCATTGACACATATTAACTATATGATAACGTGTGTTTTTCATCCTTTGATCAGACAAACAAAAGCAAACAAAACAATCTTCACCAAGTTTTAAACAAACTGGGCCCAGCTTGGTGACTCACACCTGAAATCCCAGCAGTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGATCAGGAGTTCGAGACCAGCCTGGCCAAGAGGGTGAAACCCTGTCTCTACTAAAAATACAAACATTAGTCGGGTGTGGTGGTGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCGCTTGAACCTGGGAGGCGAAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCAACAAGAGCAAAATGCCATCTCAAAAATAAATAAATAAATAAATAAATAAACTGAAGACACCCTTTGAATAAGGAAAACATGTAAAGTTTCTTAAATATTTTCAAATCTTGCTACAGCTTGAGCTAAATTGGCAACCTCTAAGGAAGCCTTCAGGTGTATATGAGGAATTCCATAAAGTTGCATTGGTGACAGTGTAAGTTGGTCTGTAGGCTTGGGACAGGATATTATCAGCATTGTAATGGGATTAAGAAAAAAAATCAGAGCCGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCATGAGGTCAGGAGATTGAGACGATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATGTATATATAAAAAAATTAGCAGGGCATGGTGGCACACACCTGTAGTTCCAGCTCCTTGGGAGGCTGAGGCAGGGGAATCGCTTGAACCCAAGAGTCGGAGGTTGTAGTGAACCGAGATTGCACCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAATCAGAATTCCCTTAGGAATTCCACACCTTCATTAATATAACCACCTAAATTAATATAATTAATAATCCTAATTTAACCAGTTAATTAGATTAATATAACTTCCCCTCCTGGGACCTATGCATATGAAGTTTCATATATGATTCCTTATTTTCTCTGATTGGCAATTTGAATAACATCAGATGACCCCAAGCTTTTAAACTGTATATTCAAGAACATATTCTGCACACGCTTTCCAAATGGATGCAAGAACTGCAAAAATTCTTACCTTATTTGGATTGACTTGAATTCTACAACTGATGATAATAATAAAGTTTTGTGATGTTCACTCATTCCAGTGCCTTGAGTTAATGCTGAATTTAGTGGCTATTTCTTCTTGAATCTTTCCCTTTTAACTTTTCTTCCATACAG
Seq C2 exon
AGGAGTTTGTTCTGGCAGCTCAGAAATTTGGTCAGGTTACACCCATGGAAGTTGACATCTTGTTTCAGTTAGCAGATTTATATGAGCCAAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000004864:ENST00000265631:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGGAGGTACCACATC
R:
CCCCTTGGCTCATATAAATCTGCT
Band lengths:
233-1667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains