GgaINT0093619 @ galGal3
Intron Retention
Gene
ENSGALG00000009728 | F1NWI3_CHICK
Description
NA
Coordinates
chr2:24128915-24129972:-
Coord C1 exon
chr2:24129834-24129972
Coord A exon
chr2:24129009-24129833
Coord C2 exon
chr2:24128915-24129008
Length
825 bp
Sequences
Splice sites
5' ss Seq
AGGGTTTGT
5' ss Score
3.38
3' ss Seq
GTATTTCTGTTCTCTTGCAGAGG
3' ss Score
11.06
Exon sequences
Seq C1 exon
GCTGCTGGTGGTACCACTTCTCATCAGGTCAGCTTTTCCTATTTTAATGGATTTAATTCTCTCCTTAACAACATGGAGCTCATTAGAAAGATCTACAGTACTCTGGCTGGAAATAGAAAAGATGTGGAAGTCACTAAGG
Seq A exon
GTTTGTATAAATGTTTGCAATCTGGAAATTTCCTTGGGCATTTGCTTTGGGCGGGTGGAGGGGAAGAACCTCCTCTGTATGCTTTTAAATCAATGGGAGAGAGAGAAAGCCTGCTTTGTTAGTATTCCTCGGTACACCATTCAGTTTTGTACACTCCTGTTGGAGTCCACCCTCCAGGTTTTTCATTTTGTCTCAATCAGAAAAAGGTCCCAGTAAACTGCCAGTGGGGGCAGGGTGAGGAAAGTATGTAAAGATATTTAAAAGTTTAAGAAAACTTCCTAGGACTCCTGCCAAATTGGCTGCCTATTAAAGTGACCTTCAAGGGTAGTTGAAGAATTCCATAAACTTGTATTGGCAGCACAGTAAGCTGATCGACAAGCTTGGAACAAGATGTTATCTGCTATATCTAACCTCTTTATAGAGAATTCCCTGTGCAGTGCCAGAGTTTCATTAATGTGGCCTACTGGGACTATGCATAAAATGTTCCACATCTCTTAACTCTTGATTTTTTTTCTTTGCTTTTTTTTCCCTGTGACCCACAACTGATTGATACCGTATGTCAAATACCCTCAATCCTGCTGATAGTACTAAGCTTCAAGACCTGAGAGTAGTACTTGTTTACATGGTGGATATACCATTTCAAACATACATTTATGTAGTGGCAGGAACACTTCTGTGGTGGGTCACTTCTTTTGCTTCCCTTTCCCTTTTTCTTTCCCACCATTACCATCTTCTGCTTAACACAAAGTATGTGTAAGGACTCTGAATTACTTGTATCTGGTTTGATAATTTTTGTTTCTTTTCTGTATTTCTGTTCTCTTGCAG
Seq C2 exon
AGGAGTTCGTTCTGGCAGCTCAGAAATTTGGTCAGGTTACACCCATGGAAGTAGACATCTTGTTTCAGTTAGCAGATTTATATGAGCCACGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009728:ENSGALT00000015833:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTGGTACCACTTCTCA
R:
CCCCGTGGCTCATATAAATCTGC
Band lengths:
231-1056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]