RnoINT0136828 @ rn6
Intron Retention
Gene
ENSRNOG00000009957 | Slc25a13
Description
solute carrier family 25 member 13 [Source:RGD Symbol;Acc:1565889]
Coordinates
chr4:31650848-31651720:-
Coord C1 exon
chr4:31651582-31651720
Coord A exon
chr4:31650942-31651581
Coord C2 exon
chr4:31650848-31650941
Length
640 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TCTCTCTTTCTTCCATACAGAGG
3' ss Score
9.58
Exon sequences
Seq C1 exon
GCCGCTGGAGGCACGAGATCTCATCAAGTCAGTTTCTCCTATTTTAATGGATTTAATTCGCTCCTTAACAACATGGAGCTCATTAGGAAGATCTACAGCACCCTGGCTGGCAGCAGGAAAGATGTGGAGGTGACTAAGG
Seq A exon
GTGAGTGAGTGCACTGGAATGCTTGTTCCAAGTGTGCTAGGGAGCGGGGATGGGGAGTGAGGCAGGCAGCCTGGAGTTTACTTAGGAGTTCCTAACCCACTCACACTGGTGAATTCATTAGTGACGTGTGTCCTCTAGTCTGCGATCAGACGAACTAAAGCAGACAAGACAATTTACACTAGGTTTTTGACAAACTGAAAACGACCTTTGAATGAAGAATAGAGGACTTGTTGAATCTTTCCATTTCTTACAAGAAGTGGACAGTGGCCCTCAAAAATACATTGAGGGTTTCACAAACCCTGTGTTGCTGATACCATAATGTGATCTGTGAACACGAAGAAGATGTTATCAGCATTTATAAGATTCAAAAAACCTATAAGAATAACTTGGGGACCTGCTATGTCAGTGTAGTTTGAATACCGTCTGCTGTCATTTGTTTATAAAGCATTCAGGTAGCACCCGGCTTTACTCTGAGTGTTGGCTGGGATGGAGTTCTGTATTCTTTTTCCAAGTGGGTGAAAGAGCTGGGGAAATGAGGGATGACTTCATGATAACCTGTTGTGATGTCCACTCCTCCTGGGCGTTGACTGAACCCTGAATTTAGCATTGATCTTTCTGACTCTCTCTTTCTTCCATACAG
Seq C2 exon
AGGAGTTTGCTCTGGCAGCCCAGAAGTTTGGTCAGGTTACACCCATGGAAGTTGACATCTTGTTTCAGTTAGCGGATTTATATGAGCCGAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009957:ENSRNOT00000013817:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGGCACGAGATCTCAT
R:
CCCCTCGGCTCATATAAATCCG
Band lengths:
230-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]