HsaINT0151655 @ hg19
Intron Retention
Gene
ENSG00000004864 | SLC25A13
Description
solute carrier family 25, member 13 (citrin) [Source:HGNC Symbol;Acc:10983]
Coordinates
chr7:95818893-95820559:-
Coord C1 exon
chr7:95820421-95820559
Coord A exon
chr7:95818987-95820420
Coord C2 exon
chr7:95818893-95818986
Length
1434 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TTAACTTTTCTTCCATACAGAGG
3' ss Score
8.67
Exon sequences
Seq C1 exon
GCTGCTGGAGGTACCACATCCCATCAAGTTAGTTTCTCCTATTTTAATGGATTTAATTCGCTCCTTAACAACATGGAACTCATTAGAAAGATCTATAGCACTCTGGCTGGCACCAGGAAAGATGTTGAAGTGACTAAGG
Seq A exon
GTGAGTGAGAATATATCTGAATTCTAGCCTGCAAGTATTGTGGTGTATTATTATTAGGGTGAAGAAGGCAACTAGTACTTTATTATTTTTCTATCCCATTGACACATATTAACTATATGATAACGTGTGTTTTTCATCCTTTGATCAGACAAACAAAAGCAAACAAAACAATCTTCACCAAGTTTTAAACAAACTGGGCCCAGCTTGGTGACTCACACCTGAAATCCCAGCAGTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGATCAGGAGTTCGAGACCAGCCTGGCCAAGAGGGTGAAACCCTGTCTCTACTAAAAATACAAACATTAGTCGGGTGTGGTGGTGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCGCTTGAACCTGGGAGGCGAAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGGCAACAAGAGCAAAATGCCATCTCAAAAATAAATAAATAAATAAATAAATAAACTGAAGACACCCTTTGAATAAGGAAAACATGTAAAGTTTCTTAAATATTTTCAAATCTTGCTACAGCTTGAGCTAAATTGGCAACCTCTAAGGAAGCCTTCAGGTGTATATGAGGAATTCCATAAAGTTGCATTGGTGACAGTGTAAGTTGGTCTGTAGGCTTGGGACAGGATATTATCAGCATTGTAATGGGATTAAGAAAAAAAATCAGAGCCGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCATGAGGTCAGGAGATTGAGACGATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATGTATATATAAAAAAATTAGCAGGGCATGGTGGCACACACCTGTAGTTCCAGCTCCTTGGGAGGCTGAGGCAGGGGAATCGCTTGAACCCAAGAGTCGGAGGTTGTAGTGAACCGAGATTGCACCACTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAATCAGAATTCCCTTAGGAATTCCACACCTTCATTAATATAACCACCTAAATTAATATAATTAATAATCCTAATTTAACCAGTTAATTAGATTAATATAACTTCCCCTCCTGGGACCTATGCATATGAAGTTTCATATATGATTCCTTATTTTCTCTGATTGGCAATTTGAATAACATCAGATGACCCCAAGCTTTTAAACTGTATATTCAAGAACATATTCTGCACACGCTTTCCAAATGGATGCAAGAACTGCAAAAATTCTTACCTTATTTGGATTGACTTGAATTCTACAACTGATGATAATAATAAAGTTTTGTGATGTTCACTCATTCCAGTGCCTTGAGTTAATGCTGAATTTAGTGGCTATTTCTTCTTGAATCTTTCCCTTTTAACTTTTCTTCCATACAG
Seq C2 exon
AGGAGTTTGTTCTGGCAGCTCAGAAATTTGGTCAGGTTACACCCATGGAAGTTGACATCTTGTTTCAGTTAGCAGATTTATATGAGCCAAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000004864-SLC25A13:NM_014251:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGGAGGTACCACATC
R:
CCCCTTGGCTCATATAAATCTGCT
Band lengths:
233-1667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)