GgaINT0093619 @ galGal4
Intron Retention
Gene
ENSGALG00000009728 | SLC25A13
Description
calcium-binding mitochondrial carrier protein Aralar2 [Source:RefSeq peptide;Acc:NP_001012967]
Coordinates
chr2:24295254-24297099:-
Coord C1 exon
chr2:24296961-24297099
Coord A exon
chr2:24295348-24296960
Coord C2 exon
chr2:24295254-24295347
Length
1613 bp
Sequences
Splice sites
5' ss Seq
AGGGTTTGT
5' ss Score
3.38
3' ss Seq
GTATTTCTGTTCTCTTGCAGAGG
3' ss Score
11.06
Exon sequences
Seq C1 exon
GCTGCTGGTGGTACCACTTCTCATCAGGTCAGCTTTTCCTATTTTAATGGATTTAATTCTCTCCTTAACAACATGGAGCTCATTAGAAAGATCTACAGTACTCTGGCTGGAAATAGAAAAGATGTGGAAGTCACTAAGG
Seq A exon
GTTTGTATAAATGTTTGCAATCTGGAAATTTCCTTGGGCATTTGCTTTGGGCGGGTGGAGGGGAAGAACCTCCTCTGTATGCTTTTAAATCAATGGGAGAGAGAGAAAGCCTGCTTTGTTAGTATTCCTCGGTACACCATTCAGTTTTGTACACTCCTGTTGGAGTCCACCCTCCAGGTTTTTCATTTTGTCTCAATCAGAAAAAGGTCCCAGTAAACTGCCAGTGGGGGCAGGGTGAGGAAAGTATGTAAAGATATTTAAAAGTTTAAGAAAACTTCCTAGGACTCCTGCCAAATTGGCTGCCTATTAAAGTGACCTTCAAGGGTAGTTGAAGAATTCCATAAACTTGTATTGGCAGCACAGTAAGCTGATCGACAAGCTTGGAACAAGATGTTATCTGCTATATCTAACCTCTTTATAGAGAATTCCCTGTGCAGTGCCAGAGTTTCATTAATGTGGCCTACTGGGACTATGCATAAAATGTTCCACATCTCTTAACTCTTGATTTTTTTTCTTTGCTTTTTTTTCCCTGTGACCCACAACTGATTGATACCGTATGTCAAATACCCTCAATCCTGCTGATAGTACTAAGCTTCAAGACCTGAGAGTAGTACTTGTTTACATGGTGGATATACCATTTCAAACATACATTTATGTAGTGGCAGGAACACTTCTGTGGTGGGTCACTTCTTTTGCTTCCCTTTCCCTTTTTCTTTCCCACCATTACCATCTTCTGCTTAACACAAAGTATGTGTAAGGACTCTGAATTACTTGTATCTGGTTTGATAATTTTTGTTTCTTTTCTGTATTTCTGTTCTCTTGCAGAGGAGTTCGTTCTGGCAGCTCAGAAATTTGGTCAGGTTACACCCATGGAAGTAGACATCTTGTTTCAGTTAGCAGATTTATATGAGCCACGGGGGTAAGTGAAGAATTATCTATTCTTCCCTTTTTCTTTTCCTCCTCTCGTGTTTTCTGAAGGAGTGGGAGGTGGTGGTGGGGAACAGAAGGGTGTGGTGTAGTGGTCAAATGCAGATAACTCCTTGTGACCCAAAAGCCCATCTCTTAGCAGTTGCTAAGCTGAATTAATTTCCTCAGGCGTATGACATTAGCTGACATTGAAAGAATTGCTCCTCTGGAGGAAGGAACGTTGCCCTACAACCTGGCTGAGGCTCAGAGACAGGTAAGAATAGGAACCAGTAAAATGCTATTACATATTGTGTTCTGTTTCCAGTGTTAGAGAGGAAGCCTACCTCTTTCTGTGTTTTTTATCTCGTCTCTGTGCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACCTGAGAGTAGTACTTGTTTACATGGTGGATATACCATTTCAAACATACATTTATGTAGTGGCAGGAACACTTCTGTGGTGGGTCACTTCTTTTGCTTCCCTTTCCCTTTTTCTTTCCCACCATTACCATCTTCTGCTTAACACAAAGTATGTGTAAGGACTCTGAATTACTTGTATCTGGTTTGATAATTTTTGTTTCTTTTCTGTATTTCTGTTCTCTTGCAG
Seq C2 exon
AGGAGTTCGTTCTGGCAGCTCAGAAATTTGGTCAGGTTACACCCATGGAAGTAGACATCTTGTTTCAGTTAGCAGATTTATATGAGCCACGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009728:ENSGALT00000015833:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTGGTACCACTTCTCA
R:
CCCCGTGGCTCATATAAATCTGC
Band lengths:
231-1844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]