BtaINT0138372 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000054 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr11:103901330-103902202:-
Coord C1 exon
chr11:103902121-103902202
Coord A exon
chr11:103901435-103902120
Coord C2 exon
chr11:103901330-103901434
Length
686 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CGCCTTTCCCTGCCTTTCAGGCT
3' ss Score
10.4
Exon sequences
Seq C1 exon
GGAAGACCTGGGAAAAGGTCCTGCTCAGGAAGTCGGTGGTGAGTGACCGCCTGCAGCGGCTGCTCCAGCCCAAGTTGCTCAA
Seq A exon
GTGAGTGCGGAGGCTCCCTGCCCTGGGGCGAGGCCCGGGCGGGCTGGCGGCTCCGTGGCCAGAGGCCTTGCCCGCGTCCCTCCGCTGCAGCAGGAGCAGCACAGCTCCTGGCCTCTCCCTTGGGGGGGGTGTGTGAGGGCCAGCCCGTCCTCCGTGAGCCGTCGGCCTGGATTGGGCTGCGCTGAGAAAGAGAACTGTTGGCAAGACGGGCGTCCCACGTGTGCTGACGGGGTGGGATCTCCTGACCACGCTGCAGCACCTGGGGTCAGGCCAGCGGTCCCTAGGGCCGCCTCCCGGCTCGAGTGGGTCCGGGCTTGTTTTGGGGCAGTGGGGTCACACCTCGGGTCCTGCTCGGCTTGTCCTGGAGGTGGTTGTCTCTGAGGGTCAGCACGTTTGGAGATCGGACGACGTGCCGGGTGCCAGTCGTGTCTCCTGTGTGAGCACCGCCGTGTGCACTGCCCGCGTGCCCGTCACAACAGCTGCACACAGGGCTGCGGCTTTCTCTCCGGGTGTTTGGTGGGGAGGGTCAGCCTTTAGAGCCTGTGCTCCCCACAGCCGTGCCGCGTGGTGTGCTGGCAGGAGACCAGCCCCGCGGGTGCCTGCCCAGATCCGTGGAAACACCAGGCCAGCTGGCCGCGGGCACAGCATCGCCGTCGGTCCCACAGGCGCCTTTCCCTGCCTTTCAG
Seq C2 exon
GCTGGAGTACTTGCAGCAGAAGCAGAGCAGGGCCACAAGCGAGCTGGAGAAGCAGATCCTGGAGAAGCAGGCCAGGGAAGCGGAGAAGGAGGTGCAGGACATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000054:ENSBTAT00000000060:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development