GgaINT0126124 @ galGal3
Intron Retention
Gene
ENSGALG00000001910 | SNAPC4
Description
NA
Coordinates
chr17:8584512-8585533:+
Coord C1 exon
chr17:8584512-8584593
Coord A exon
chr17:8584594-8585428
Coord C2 exon
chr17:8585429-8585533
Length
835 bp
Sequences
Splice sites
5' ss Seq
GAAGTACGT
5' ss Score
7.46
3' ss Seq
TTGAAAATGTCTTTGAACAGGTT
3' ss Score
7.52
Exon sequences
Seq C1 exon
GGAAAAGCAAAGAGAAGGTGCTACTGCAGAAGTCAGTTGTAAGTGACCGCTTGCAGCGCCTGCTACAGCCCAAGCTCCTGAA
Seq A exon
GTACGTACTGTGCCATGTCATGAGAGCGTTGCAGGTGAAGTAAGGAGGGAAAACAAGTGGAGGTTCCATTGTCCTTCAGCGAGTTCTCATGTTAACTCATTGCAATGTCAGTAAGGTTGCAAAGCACGGCACGGATGCTTTGTCACTGTTGAGCCTGGGAGGCCTGCTTAGTGATCCCCAGATCCCCTGTCCTGTGGGCACCAGCACAGACAGTGACACTGTTGTAGACAGCAGCATTTCCATTCTTTATTGACATCAATATTTTGTGTGTGTGATATTGAAGAATCAAGGGCTTTAATGTTCTGACTATAAGCAAGAGGTTACAGCATTCAGGTTGCGCTGCAAAGGCTTGGTGATTATTTTGCAGGTAACCAACAACAGAGGAGGTTTTGTATTGAAGATACCGTGGCATTTTATAGCCCTCTGTTTCCTCCTGCTCATGTAATGGTATAACCTAAAACAGCCTCAGGGCTTGAAGCTGAGACTGTGGTACGTTGCAAGTGAGTCATAACAGCGTGTCCTTTGAGAGATGTATGTGCCTGTAGCTGGTGCAGACTTAATTTGTTGCTGTTGCAGCTATCACTGAATCTCTCTGTAAATACCAAAGTGATTAATCTGAGACCTGTTCTGGGTCAGCTGTTTGCATTGAAGCAGCAAAATAGGACGAGTTTGCCATGTGGGAGAACCTAGAAGAACAGTCTTGCTTACTGTGGGAAATAAGCTGAAGGAAAGAACTGTACTTGTGGGAAAGACTCTTTTGCCCTATGTCTTTTGATGCCATTGACCTCCTTCCCATCTGGTCTTATTAAGTAATATTGAAAATGTCTTTGAACAG
Seq C2 exon
GTTGAGTTACTCGAATCAGAAGCTGGAAAACGTCAAGACTGAAATGGAGAAACAGATCTTGGAGAAGCAAATCAAAGAAGTGGAACGGGAAATAGAGGCAATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910:ENSGALT00000002951:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAAGCAAAGAGAAGGTGC
R:
TGCCTCTATTTCCCGTTCCAC
Band lengths:
182-1017
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]