BtaINT0140462 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99177388-99178062:+
Coord C1 exon
chr11:99177388-99177442
Coord A exon
chr11:99177443-99177865
Coord C2 exon
chr11:99177866-99178062
Length
423 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CTTTGCCCTTCGCCCCACAGCGC
3' ss Score
12.01
Exon sequences
Seq C1 exon
GTCCTGCATGGTGGAAGAATCCGGGACCCTCGAATCACAGCTTGAAGCTACCAAA
Seq A exon
GTAAGTGCCCCTTCTGCCCACCCCTGCCAGCAGGCCTCCTTGGCTGCAGGTCAGGGACGAGGTGGGCTGCTTGGATGCCCCCTTTCTCCCTTGCCTTAAAGCAGCCCAGGACCGCTGTCACTTTAGAGGCTGCTGCCTGGAGCCCTGCTTGGACAGGAAGAGGCTCGTTGGGTCCTCAGTGTATCCTGTTGCCCTGGCAGGTCAACCCAATCAGTGCCTCTCACGCTGAAGCCTCTACTTTGTTGAGGCTGTAGGGTTTTAGCCTCACCCCATCCCTCCTTTGCCCTTGCAGGCAGCCCTACAGGCCTCAGGCTGGGGTGCTGAGACTGAGGAGGGCTGTTAAGGAGGAGGCGTTTGAGCCCAGGGACCTAGGCAAGAACCCCTGAACCCCTGTCCCGTGTGTCTTTGCCCTTCGCCCCACAG
Seq C2 exon
CGCAAACACCAGGAGATTCGAGCTATGAGAAGTCAGCTCAAGAAGATTGAAGACCTGGGGGCGGCCATGGAGGAAGCGCTGATCCTGGACAACAAGTACACGGAGCACAGCACCGTGGGCCTGGCCCAGCAGTGGGACCAGCTCGACCAGTTGGGCATGCGCATGCAGCACAACCTGGAGCAGCAGATCCAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327:ENSBTAT00000020395:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=NA C2=0.293
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(17.0=100)
A:
NA
C2:
PF0043516=Spectrin=PD(56.6=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGCATGGTGGAAGAATCC
R:
TGGATCTGCTGCTCCAGGTT
Band lengths:
246-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development