DreINT0155205 @ danRer10
Intron Retention
Gene
ENSDARG00000019231 | spna2
Description
spectrin alpha 2 [Source:ZFIN;Acc:ZDB-GENE-051113-60]
Coordinates
chr21:13115540-13118119:+
Coord C1 exon
chr21:13115540-13115594
Coord A exon
chr21:13115595-13117922
Coord C2 exon
chr21:13117923-13118119
Length
2328 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTTCTGGGTTTTTCTGCAGCGT
3' ss Score
9.56
Exon sequences
Seq C1 exon
GTCCTGCATGGTGGAAGAATCTGGAACTCTAGAGTCACAGCTAGAAGCCACTAAG
Seq A exon
GTGAGTTTGACATTGGGGAAAGATCGTTTGGTGAAGCGGATACATGGAGTACTGTTTTAAAGGATTAGTTCACCCTGAAATGAAAAGTTCTGTTTGTAATTATTCACCTCAGACCTTTATCTTAGGAATCTGAATATACACATTGTATAAAAAAAATAAAAAAAAGCTTTGTAAAAAACATTCCATATGACTTCCGTGGCTCAACTGTAATCATACGAAGCTCCAAGAACACTTTTGTGCACTGAAAAATAAATAAATACATTTTAAAAAGAAAAAATATATATATGAATTTAAGTGGTGGGCTACTATCGCCGTTAAGGTGCTGCGTTAAGACTCTTATGGGCCGATTAAAACAAAATATTGTTAATCTATTTTCAAAGTTGGGTTGGGAGCTGGGTCTATTCTACACAAGCTATGATGACTTTCACCTCGATATTTTAGCGCGGATGTATACCTGGCCGAATTGCTCTGTAGGTGGCGAGAACGAGTCTTTGAACCTGTGTGTATTCCTACTGTGAAATTACCACATCACGTGCTAACATGGATGCAGTTTACTAGAGTGAATCTGATTAATGTTAGCTCCACATCTAACTATCAGGCACCTGTAGAGTTTATGCGTTTGAGTAAAACATATACAAATAAAATGGACCAGGTGCTTTTTAAAATGAATGACAATGAATGAAAGTCAAACCAGTAAGCTGTCTGACAAAAAAACTGCCCTTCTGAATCAAATCAGCAGCGATGCCCTTCTGGATCTTTCACTTACTTCGAAGACACTACTGACTACATTTACATGGACATCTGTAATCTAGTTATTTGCCTTAATAATATAACTAAGGTGTTTATGTGAAGTGCTTTCATGTAAGAGATTCCTGTAATTTTGGTTTACTTTAACTGCAGTTTCGCAGTTTCACTCATCATGAACATTTCATTCATGCCCCTGTGACAAACTGGGCTATCAGAATAAGGAGTAAAGACTGGTGAGAGTGTAATGAAAGTTAATAACGCTTGCCAAATGGAAAAAAAACTTCAGCATTTCGCGATTTTATTTGCGTGTATGTGGTCCTTTACTCATAGCCGCGTGTGTGGATCTTGTAGGAAAATATGGCGAAAAGTACTATATGAGGGTAATAGTTTGATCACAGTGTTTACTTCAATAATGCCACCAATATATGCATACTCCACTTCTTAATTCCATTTCTGTTAAGTTCAGTTATGACTTTAGTCGCATTAAGGTAATCAAAAAAAATAAAATAATATATATATATATATATATATATATATGTATGTGTATATATATATATATATATATATGTATGTGTATATATATATATATATATGTATGTATGTATATATATATATGTATGTGTGTATATATATATATGTATGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGTGTGTGTATATATATATATGTGTGTATATATATATATGTGTGTGTGTGTGTGTATATATATATATATATATATATATATGTGTATATATATATATATATATATATATATATGTGTGTGTGTGTATATATATATATATATATATATATGTGTGTGTGTGTATATATATATATATATGTGTGTGTGTATATATAAATATATATATATATATATAATATAATATAACTTTGTTCGCCAATGTCTTATGTATCATTGTTGACTTTCATGCCAATTATGTTATACTGCATGTAGTAAAAACATAAACCCTCACAACCTGACACAGGAGAGAAGATATAGGAGAACAGAGTTATATTTGTAGTTTTTTTTTTGGGACGCAAAAGTGTTCTTGAATCTTGGATATGATTACAGATGAACCACTGAAGTCACGTTGAACATTTAGTGTTTTTAGCTTCTTTTCTGGACTTTAAACGTCTCATGATCATTGCTGTCTATGGAGGATGAGAGAGCTCTCGGTTTCATCTAAAATCTCTTAATTTGAGTTCCAAAAATGAACGATGGTCTCAGGAAGTTGGAAAGACAAGAGAATGAGTAATTAAAACAGAATCTACATTTTTGTGGGGCACAATTCTTTTAATAAAAATCTCCATCTGGTGCTTAAAAAACATTTCCTATTATTTTAATCAGTTTTCGTCACATAATATATTTTCTCTGAATTTTTAAAGATGCATTTGTTTGAGAGAATGTAGCTTTTTATGCCCGCAGGAGAATTTAAAACCCCTGCACACATCTCAAATTGGAGAAAGTAATGGATAAATGGGCACTCTGGACGGTAAGGTGGTGTGCTAATGTCTTTTTTTCTGGGTTTTTCTGCAG
Seq C2 exon
CGTAAGCATCAGGAGATTCGTGCCATGCGCAGTCAGCTGAAGAAGATTGAGGATCTGGGAGCTGCCATGGAGGAGGCGCTGATTCTGGACAATAAATACACAGAACACAGCACCGTGGGTCTGGCACAACAGTGGGACCAACTCGACCAGCTGGGCATGAGAATGCAACATAACCTGGAACAACAGATCCAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019231:ENSDART00000102251:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.270
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(17.0=100)
A:
NA
C2:
PF0043516=Spectrin=PD(56.6=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]