BtaINT0141654 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44458953-44460360:+
Coord C1 exon
chr15:44458953-44459039
Coord A exon
chr15:44459040-44459585
Coord C2 exon
chr15:44459586-44460360
Length
546 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TCACCCTCTCTGGCCCACAGGCA
3' ss Score
10.22
Exon sequences
Seq C1 exon
GCCTCTTTGAGCAGCGAGTGGAACAATATTTAGAGGAACTCCCAGACACTGAGCAGAGTGGAATGAACAAGTTTCTCCGTGGTTTGG
Seq A exon
GTAAGCAGCCTTGTCACTGATGAGACAAGTTCAGCAAGGAGGGGGTGGGGTGGTTGGCGGATCTGTACCCCAAACTACTCTAAATAAACCAGCGACAATGGGAATTTATATTAGGGCTGTAGACAGAACAGGAAATCTGACAGATATTCACTTCAATTGGGTCTTTTGGGGTGCACTTCTTCCTGAGTGAACATGAGAGTCGTTAGAACCAGTGAGTGTTCCTCATGTCTATAAGGGGAGGTCTACTAAGAAGTAGCAGAGTGTCCTTCTCTGAAAAAGCTCCCCTCCCTTCAAAGAGCTCAGCCAGCTGAACCATAGAATCAAAGCTTGTCTCACTTTAAAGGAAAATTGAGACCAAAGAAGTTAAATGGCTTGCCCAAGGCTGTTCATGATTAATACCAGAGCCTAATTAGAGCTCTAGAGTGTTTTCACTATCAGGGTCTAGCTGCAATCCAGTCTCTCGAATCCTTCTCTCTCACTGAGAGTTAGGACTGTTGGAAGCGATGATACTGAAACATTCTCACTCTCACCCTCTCTGGCCCACAG
Seq C2 exon
GCAACAAAATGAAGTTCCTCCACAAGAAGAATTAAGCCCCTTCCCCAGACAGAGCCCAGTGCCTTGCAGAGCCTGGGGAGGGGACCCAGCCTTGGACCCTTGGGCTGCTGTGGCCGCTCTGCCTCCACAGACCCCACCCTCCAAGCCAGCCCACCTCTGCCTTCACGACATCCCAGGATACTGTTTGTAAATAATCTGCTGTAAGCTTTCTTATGTTTTTGTAACAAGCAAAGAGAATCTGGTAAATATTTGTATATTCCCAAGGGGCTGGGTGCTTTCCTGCCCTGCCTGAGCATGGATGAAGTTTTGCTGGGTGCTGGTGACTGGCCAATTATGTGCAGCTGACTGTCTCAGCCGAACCACTGATCTTCCCCTGGAGGCTCCTGGCCTGCCTGCCTGCCTGCCTGCGGCCCCTGCTGCCAGTCTCGGGCCCTGGAGAGCACATGCTGTCTTGTCATGTATGAGACTTTTTAAAAAAAATCTTAGAGTTTCTATTTTTTTCTAGTAGTCCCCCTCCCCTAAGCGTCTGTTTTGAAAGGCAAAGGCCAATCAGTCCCCATTTGCAGCATGGTACCAGGCTCTTGGGCCTGGCCTTCTCTTCTTTCTCCCACCTTTGTGATGGTCAGTGAGGCATGGGAAGCCCACCCTCCAGCTCTGCTAGTGTCCTCCAGGCCCAGCTCCCAGTCAGTGGTGGCCATGATGCGGTACAGGGCATCCCTCCTTCCCACCATCTACGGGTGTTCTCAATAAACAGTGTATAGTTGTTTGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356:ENSBTAT00000007048:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTTTCTCCGTGGTTTGG
R:
TAATTGGCCAGTCACCAGCAC
Band lengths:
355-901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development