DreINT0156556 @ danRer10
Intron Retention
Gene
ENSDARG00000037363 | st5
Description
suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
Coordinates
chr7:28193791-28195113:-
Coord C1 exon
chr7:28195027-28195113
Coord A exon
chr7:28194284-28195026
Coord C2 exon
chr7:28193791-28194283
Length
743 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TTTTTTATCTTTTTTTCCAGGAA
3' ss Score
12.17
Exon sequences
Seq C1 exon
GTCTTTTTGAGCAGAGGGTGGAGCAGTATCTGGAGGAGTTACCAGACACAGAACAGAGTGGAGTCAACAAATTTCTGAAGGGTTTAG
Seq A exon
GTGAGTACAGAAAACTAGTTACATGTACGGTGCTCAGCATAAATAACACACAATGATATATTTGTGCATATACATTAGATTAGCCAGTAAAAATTACACCCAAATAAATATGTTAGGAATATATATATATATATATATATATATATATATGGCGAGGCATTGGTGCAGTAAGTAGTTTCTCGGCTCAGTTGGAGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCCTTCGCGTGGGTGCGTCCTCCGGTTTCCCCCACAGTCCAAAGACATGCAGTACAGGTGAATTGGGTAGGCTAAATTGTAAATTGTGATTGTAAATTGAGTGTGTGTGTGGATGTTTCCCAGAGATGGGTTGCGGCTGGAAGAGCATCCGCTGCGTAAAAATTCCGCTGTGGCGACCCCGGATTAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATGAATGAATATACAATAAAATGATGAGAAACATAAAAAATATACAATTTCATTAGGATTAAGAGTTAAGAATATTTCAAATATCTCTCTATTCCTACAGATGTTAGGGGACCAATGTCTTATTTTAATTGATATAACAGTAAAATGATTGGCTACATTCACTGAGAAATGATCAAATATGCTAGCTTTAAAAAGGGTTGCAGTCATTTATGCTGAGCACTGTACTGTATCTATAAATCCTGTTTTATGAAAAAATAAAGAAATATAACCTTACACACCAATTTTTTATCTTTTTTTCCAG
Seq C2 exon
GAAATAAAATGAAGTTCCTTCATAAAAAGAACTAAAACCACTTTATCATGAAAAACCAAAAAAAAAAATAAAATAAATAAATAAACTGTGGACATTTTCTACAAATGCTCCGCCTGAAGACTAAATCACAGATGTTATCATGACGTGCCTGTTCTGTTGACCCTGACCTTCATGTTTTTGTACATATTTATGGAAGCTGTGCTGTTATTCCCACATGTAGCTCTGTTGTTACCTTTCCTGGTACTTTGTATATGACACTAGAGAAGAAATAGGATGGTACTGAGCGTGTGAGTGGTTATAAAGCAGTATAACCTCCTGAGCTGGATGAGATATGTGTGAATGGAGACTCCACAGGTGGATGTACAGTGGCTGTGTAGTATTTAACGCTAGAATTTCTCCATGAACTGCATTTTGTACATTTATTAACACATGAAGAGTATAATTACCTTATTTACAGTGTTCAATAAAAATCAATAAAGTCCTTTTCTGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037363:ENSDART00000133050:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGACACAGAACAGAGTGGA
R:
AACCACTCACACGCTCAGTAC
Band lengths:
344-1087
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]