MmuINT0153206 @ mm10
Intron Retention
Gene
ENSMUSG00000031024 | St5
Description
suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
Coordinates
chr7:109523920-109525349:-
Coord C1 exon
chr7:109525263-109525349
Coord A exon
chr7:109524681-109525262
Coord C2 exon
chr7:109523920-109524680
Length
582 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTGCCCTCTCCATCCCACAGGCA
3' ss Score
11.17
Exon sequences
Seq C1 exon
GCCTCTTTGAGCAGAGAGTGGAACAGTATCTAGAAGAGCTCCCTGACACTGAGCAGAGCGGGATGAACAAGTTTCTCCGGGGCCTGG
Seq A exon
GTAAGTTACTTGTTACTAATGAAGGTAGCCAGAGGGGTGCTGTTCCCTAAAATGCTGTGAATCTAGGCCAGCAAATATGATAGAGGCTGTAAACAGAGCAAGAGGAAATACTGTAAGCAGCTACTGCTTTAAGAGCATTTGGCAGAAGATTCACAAAAGGGAGCCACAGATTGGACCATAATTTGGTTTTTCTGTTGTCGCTGTACATCTCTCAAGTTCACGAGTTGAGTGCCACTCATCCTTGTTCTAGGCTGTAATATTACACAAGTCTTTAATGCCAGAGTGCCAGTTCTGTAAAACCCCAGTCCTTCAGGGACCTCAGCTAGTGTAATTGCACAATCATAGCAGAGGTTTTTTGTTGTTTTTTAAAGGCAACAAGCCACAGATGCAGGGTGTTGCCCAAAGTCACACAGTGGCTGATCTCTGTGTCCTAAGTTATGTTTTCCCTACCTTATCAGAGCCGTCATTCCTGTCTGTCAAAACTGATCCTTTTTGCAAGGAAAAGAAGAGAGGCTAGGAGAGAACATGGGTGTTGAAAGGGGATCATGAAACAGCCTCACCTTTGCCCTCTCCATCCCACAG
Seq C2 exon
GCAACAAGATGAAGTTCCTCCACAAGAAGAATTAAATGCCTTTCCTGGTAGCAGAGTTTAGTGCTTTGCAGAGCCCAGGGAGAGGGCCCAGCCTGGGACCCTGTGGGCTGCTGTGGCTACTTTGCTTCTACAGGCCCCACTCCAAGCCAGCCCACTTCTGCCTTCACCATATTCCAGGATACTGTTTGTAAATAATCTGCTGTAAGCTTTCCTGTTTTTGTAACAAGCAAAGAAAATCTGGTAAATATTTGTATATTCCCAAAGGGCCAGGTGCTTTCTTGCCTTGTCTGAGCTTGGATGGAGTCTTGCTGGGTGCTGGTGACTGGCCAATTATGTGCAGCTGACTGTCTCAGCCAAACCACTCATGTTTCCTCAAGACTTCTGGCCTGTCTGCCTGAGGCCCTGCTGCCAGTCTTGGGCCCTGGAGAGCAGGTGCTGTCTTAATTATGTATAAGAGGACTGGTTTTTTTTTTGTTTTTGTTTTTTTGGTTGTTTTTAAATCTAGAGTTTCTAATTTTTTCTTCTTAGTAGTTCCCCTATCTGCCAAGCCTCTTGTTTCTGAAAGGCAAGGATCACTTCGCCCTTTTTTGCAATGTAGAGCCAGGCACTTGGGCCTGGTCCTTGTTCCTTCCATCCTCTGACATGGTCAGTGAGTCATGGGAAGCGGAGCTCCCGTCAGTCAGTGGTGGCCATGATGCGGTACAGGGCATTTCTCCTTCCACCATCCACAGATGTTCTCAATAAACTGTACATTCATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031024:ENSMUST00000077909:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACAAGTTTCTCCGGGGC
R:
TAATTGGCCAGTCACCAGCAC
Band lengths:
358-940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types