HsaINT0159821 @ hg38
Intron Retention
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr11:8693351-8695549:-
Coord C1 exon
chr11:8695463-8695549
Coord A exon
chr11:8694131-8695462
Coord C2 exon
chr11:8693351-8694130
Length
1332 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTGTCCTCTCTGGCCCACAGGCA
3' ss Score
10.2
Exon sequences
Seq C1 exon
GCCTTTTTGAGCAGCGAGTGGAGCAGTACTTAGAAGAACTCCCAGACACTGAGCAGAGTGGAATGAATAAGTTTCTCCGAGGTTTGG
Seq A exon
GTAAGTGGCCTTGTTACTGATGAGATAGATGTTCAGCAAGAAGGAAGGGGCTGGGAGATTTGTGTTCCCGAATACTCTAAATCAATGTCAACAGGTGTTATACTGGGGCTGTAGACAGAACAGGATGTAGACATCCCATAGTGACTAGAAGGTTCTCAGCCAGAATTCCAAGGGCATTTTGCACAGTAGTGGTCCTTCAATATCTGTGGGGGATTGGTTCCTGGATACCCAAGGATACCAAAATCCACAGATGCTCAAGTCCCTTCTATAAAATGGCATAGTATTTGCATATAACCTGTGCACATCTTCCCATATACTTTAGATCATCTTTAGATTACTTATAATACCTAATATAATATAAATTTTGTTATTTTATTTTATATTTTATTTATTTTATTTTAGAGGCAAGGTCTGGCTCTGTCACTCAGGCTGGAGTGCAGTGGTGCAATCCTAGCTCACCGCAGCCTCAAACTTCTGGCCTCACGTGATCCTCCCTCCTCCACCTCCTGAGTAGCTGGGACTACAGGCATATGCCATTACACCTGGCTATTTTTAAAATTTGTTTTGTAGAGATGATGTCTTGCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAGTAATACTCCCATATTGACCTCCCAAAGTGTTGGGATTATAGGCGTTAGCCACCATGCCCAGCTGTAAATAGATATTATACTGTATTGTTTAGGGAATAATGACGAGAAAAAAAAAGTCTATATATGTTCAGTACAGACACCACCATCCATTTTTTCCCCCAAATATTCTTGATCTCCAGTTGGTTGAATCTATAAACATGGAACCCATGGACGCAGAACTCATGGATATGGAGGACAGGCTGTATTTACCATATTGCATTACAAAGAGGAATCCCAGGTTCCCACATACATCAGGTCTTTCTGTTTGCACTCCTTCCTGAGTGAATATGAAGGCCATTAGAGCCAGTGAGCTTTCCTCTAGACCATAACAGGTCTGCAGACACAGCAGTGCGAGTGCCCTTCCTGCAAAATGCACCCCTCCCTGCAGGGTGCTCAGCCCGCCAGATCAGAGAATCATAGCATGTTTCTGTTTAAAGAGAAATTGAGACCAAAGAGGTTAAGTGGCTTGCGTAAAACCACACAGTGATTAATACCGGTGCCCTAATTAGAGCTCTCACGTGTTTTCACTACCCTGGATCAGATCACAGTTATAATCCAGTCTTCCTAATCCTTCCTCTCCCACTGACAGGGTTAGGGCTACAAGGAGGAGAGGGAGTGGAGGTTGGAAGGGATAACACTGAACATTCTCTCTTGTCCTCTCTGGCCCACAG
Seq C2 exon
GCAACAAAATGAAGTTTCTCCACAAGAAGAATTAAGCCTCCTTCTCAGTAGCAGAGTCCAGTGCCTTGCAGAGCCTGAAGCCTGGGGAGAAGGCCCAGCCTGGGACCCTCTGGGCTGCTGTGGCTCCTCTGCCCCCACAGATCCTATCCTCCAAGCCAGCCCACCTCTGCCTTCATCATATCCCAGGATACTGTTTGTAAATAATCTGCTGTAAGCTTTCTTAACTGTTTTTTGTAACAAGCAAAGAGAATATGGCAAATATTTGTATATTCCCAAGGGGCCGGGTGCTTTCCTGTCCTGCCAGAGCATGGATGAAGTTTCGCTGGGTGCTCGTGACTGGCCAGTTTTGTGCAGCTGACTGTCTCAGCCAAACCACTGATCTTCCCTGGAGGCCTTCGGCCTGCCTGCCTGCCTGAGGTCCCCGCTGCCAGTCCCGGGCCCTGGAGAGCAGATGCTGTCTTGTTATGTACAGGAGGACCTTTTAAAAAAATCAAGTTTCTATTTTTTGCTGGTAGTCCGCATACCCATACCCTCTGTTTTTGAAAGGCAAAGGCCAATCAGTCCCCATTTGTAGCATGGCACCAGGGTCTTAGGCCTAGTCCTCTCATTCCTCCCACCCTCCGAGATGGTCAGTGTGTCATGGGAAGCCCACCCCCAGCTCTGCCAGTGCTCTCTGGGCCTGGCTCCCAGTCAGTGGTGGCCACGATGCGGTACAGGGCATCCCTCCTTCCCATCTACGGGTGTTCTCAATAAACAATGTACAGTTGTTTGGGCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444:ENST00000534127:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAGACACTGAGCAGAGT
R:
CTGGCAGGACAGGAAAGCAC
Band lengths:
353-1685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains