GgaINT0058387 @ galGal4
Intron Retention
Gene
ENSGALG00000005927 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr5:9171089-9172816:+
Coord C1 exon
chr5:9171089-9171175
Coord A exon
chr5:9171176-9171559
Coord C2 exon
chr5:9171560-9172816
Length
384 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
CGGTGGTGCATTTTCTTTAGGAA
3' ss Score
8.03
Exon sequences
Seq C1 exon
GTCTCTTTGAGCAGAGGGTTGAACAGTATTTGGAAGAGCTTCCGGACACGGAACAAAGTGGAGTGAACAAGTTTCTGCGAGGCCTTG
Seq A exon
GTGAGCAAACTGCGTAGAAGGATTTCTGGAATTAATTTTCACGTCACTTCTGTGTTATTTATCTTGCAGGTCCAATCAGATACCCAAACAGAGGTGTAGGTATGGGGTGGGAAATCTCAAAAGAATACAATGAAAACATACTTAAAGTCAAGCTTCATCGTGGTCTTTGTGAAACGTTTTCATTTCATTTCCAATTCCAAACGTTTCATTTCCAAACATAATTGAAGGGAAAAAAAACGTTGATTACTAAGTATGGTGTTAGTTGGCTCTCCCTACTGGTGTTAAACAATCGCATTGCAAATTACACCCACCCATTAAGTAACCTTTGATTGCAGTTGGCTTTCCCAGTATGTGAAAAAGTGACCGGTGGTGCATTTTCTTTAG
Seq C2 exon
GAAATAAAATGAAGTTCCTCCACAAGAAGAACTGATCCCTTTCTGCTGAACCACCAACCCAAAGACTACGTATGGCACTGTGCTTGGGACACCTGCAGCTGCAGACCTTGATGTGGGAGGGTGAAGGAAGCCGACTGCAGCTTTGAGTGATTGCCCGCGCTGTTACAGAGCATCATTTGGATGGAATTTGTAAATACCGTGCTGTAAGCTTTTGTAACTGATTCTGTAAGGAGCAAAGAAAACTGTGGTAAATATTTGTATATTCCTGAGAATAACAGGTGCTTTCTTAGTATGAGTCGAGTTATGCTTGGTGCAAAGGTGAGTAGCTGACTGCATGCAGCTCTCAGCAGAACCACTGACTTCAGGGGATGTTTGTGAGAACTACACTGATGCCTGAGTACTGCGGTAACAAATGGACCCGCGGGTCCATGGCAGAGGTTGTGTGTGCGAGGGCTGGCTTCGTGTGGCGGAGTTGGTATGGTTTTTTTCCTACTTTTCTTTCTCATTAATTTTAAAAACGAAATAAGAAAGTAACTTGATAATAAGGTACTTGGTTCACAATACAAAGCTTCCACTTGGTTTGAACGCTGGTCAGTAAACTCCTTGTAATCCATTCTGCACTAAGACTGCTAACTGTGAGGAGAGCTCCATTCTTTGACATGCAAGCTGCAACGTGTAGGTACAGTACGTCCTTTCCTCATGTATGTATGTATGGTTCCCAATAAACCGTGTAAATATACCTGTTTTATAGTCTTTGTGTACTTCTGATGCTTTGTGGGTACAGAAGCAGAGGAACTTGTGAATGTGAATTTGCAATTAAAATACAAAATGGTTGTTACGAATCTGTCTTTCAGTAAGTTTGCTATTTTGTGACATAAAGTGTTTTTAATTTTACTTAACGTTTTTAGCTAGAGCTAAGGCATTTTATATTACCGAGGCGTTAATTTTATCCTTACAGAAACATCTCTTTAAACAGTTTTTCTTCAAGTGGGTCAGCAGAGATCCCTTTCTGGCTTTGTACGTATCATACTGCTCCTAGACCTCCTAAAGGTGGGGTTGCCATCTCTGGAGGTGCTCCAGAGACGTGGAGCTGTGGTGAGTGGGCATGGTGGGGGCGGGCTGCTGGCTGGGTGAGATGATCTTAGTGGTCCTTCCACGATTCTATGAATCCGTGATTACACGGTGGTATTTTCAGACTGCTTTGGTACTGCCTTGGTTCAATGACCTGAGCAGAAGAACAGCTGGGGTGGGAGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927:ENSGALT00000009535:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAAGTTTCTGCGAGGCCT
R:
CAGCTACTCACCTTTGCACCA
Band lengths:
352-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]