RnoINT0144177 @ rn6
Intron Retention
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174137120-174138449:-
Coord C1 exon
chr1:174138363-174138449
Coord A exon
chr1:174137840-174138362
Coord C2 exon
chr1:174137120-174137839
Length
523 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CCTTTGCCCTCTGTCCACAGGCA
3' ss Score
12.93
Exon sequences
Seq C1 exon
GCCTCTTTGAGCAGCGAGTAGAGCAGTATCTAGAAGAGCTCCCTGACACTGAGCAGAGTGGGATGAACAAGTTTCTCCGTGGCTTGG
Seq A exon
GTAAGTTACTTGTTACCAATGAAGATATCCAGGGGGGTGCTGTCCCCTAAAATACTGTGAATCTAGGCCACCAAATATACACAGGCTGTAGACAGAGCAAGAGGAAATCCTGTGAGGAAGAGATGTCCAGCTACTGCTTTAAGAGCATTTAGCACAAGATTCACAAAAAAGAGCCAAGAATCAACCCTAAGTTGTTTGGGGTTTTTGTTGTTGTTATATCTTTTGCTCACAAGAGCTGAGTGCTAGTCATCTTTGTTCTAGGCTGCAAAATATACAGATGATGTTAATGCCAAAGTGCCAGTTCTGCAAAGTTCTCCCACTCCTTTAGGGAGCTCAGCTAGTGTGATTTCAGGATAGCAGGGGCTTGTTTTGTCTTTTAAAGTTGTATTTTCCCTACCTTCTCAGAGCTGTCACTCCTCTTGTCAAATTGATCCTTTTTGCAAGGAAAAGGGGGGGCAAGGAGAGAGCATGGCTGTTTGGAAGGGATTCATGAAACATCCTCACCTTTGCCCTCTGTCCACAG
Seq C2 exon
GCAACAAGATGAAGTTCCTCCACAAGAAGAATTAAATATCTAGTAGTAGAGTCTAAGTGCTTTGCAGAGCCCAGGGAGAGGGCCCAGCCTGGGACCCTGTGGGATGTTGTGGCTACCTTGCTTCTACAGACCCCACCTCCAAAGCCAGTGCACCTCTGCCTTCATCATATCCCAGGATACCGTTTGTAAATAATCTGCTGTAAGCTTTCCTGTTTTTGTAACAAGCAAAGAGAATCTGATAAATATTTGTATATCCCAAAGGGCCGGGTGCTTTCTTGCCTTGTCTGAGCATGGAAGGAGTCTTGCTGGGTGCTGGTGACTGGCCAGTTATGTGCAGCTGACTGTCTCAGCCAAACCACTGTTTCCTGAAGACTTCTGGCCTGTCTCCCTGAGGCCCTGCTGCCAGTTTTGGGCCCTGGAGAGCAGGTGCTGTCTTAATTATGTGTAAGAGGACTGTTTTTCTGGTTGTTTCTATTTTTACTTCTTAGTTTGCCTATCTGCCAAGCCTGTTTCTGAAAGGCAAGAACCACCCTGTCCCTATTTGCAATGTAAAGCCAGACGCTTGGGCCTGGTTTTTGTTCCTTCCACCGTCTGACATGGGTCAGTTGAATCATGGTTAGTGGAGCTCCCAGTCAGTGGTGGCCATGATGCGGTACAGGGCAATTTTCCTTCCACCATCCACCGATGTTCTCAATAAACTGTACATTCATTTTGGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934:ENSRNOT00000064902:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTTTCTCCGTGGCTTGG
R:
TGCACATAACTGGCCAGTCAC
Band lengths:
357-880
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]