BtaINT0141660 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44439925-44440707:+
Coord C1 exon
chr15:44439925-44440021
Coord A exon
chr15:44440022-44440662
Coord C2 exon
chr15:44440663-44440707
Length
641 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CTCTGCTCTGACTTTTCCAGATG
3' ss Score
11.11
Exon sequences
Seq C1 exon
CTTGTCCAAAGAATTAACTCCATCTACAATGCCAAGAGGGGAAAGAAGAGGTTAAAAAAGCTGTCTATGTCCAGCATTGAGACATCATCACTGAGAG
Seq A exon
GTAGGCCTGGACACCCGAGCTGGCTCATGTTCCTGGGGCCCTTGGGCATTAGAAGTGGGAAGATGCAAGGACTAGCCTCAGTTTACCCTTCCATGGGCCAACTTGCCTTCTAGGAGGGTAGAGCCCTGCCAAAAAGTGGCCACACAGGAGGGGAGGGCCAAAAAGAGAAGAAAGCCCTGGGAACGGTTAGTTGAGACTCTGGGCTGTGAGGCCTGAATGGGGGGAGGTGGGAGTGGGAATCTGTGTCCGGCCAAAGGAAAGGCCAGACTTACTGAGCACTGTGGTCTGTTTCCCATTTTGAATCTTGGCCTCCTGGAGGCAGGACCCTTGTGTTCCAGGCCCACAGGCCTCTCTGCTGGCTCAGCCTCCAGCTTCAGCCCTCAGCTTCCCCCAGATCAGGACTGGATGAATAGGAGTTTGTGTATAGATTAACACCTGCAGGTTGAGCTCTGAGGGACACTGGCCCTGGGCCACGCAGTTCCTGGCCGGGGGCCCTTTGGAGCCCAGATGAGGTCCATCCCTCATGAGCTGGGCCCGAGGTGAAGAGGGGGAGTGGGGAGGGGGTCGGTGGGGGGTGCACAGAAGACATTTACCATGGGGCAGCAGCTCAGCCAGCCTGCACTCTGCTCTGACTTTTCCAG
Seq C2 exon
ATGAAAATAGCGAGAGCGAGAGCGACTCTGATGACAGGTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356:ENSBTAT00000007048:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development