GgaINT0058375 @ galGal4
Intron Retention
Gene
ENSGALG00000005927 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr5:9133937-9134969:+
Coord C1 exon
chr5:9133937-9134033
Coord A exon
chr5:9134034-9134924
Coord C2 exon
chr5:9134925-9134969
Length
891 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
3' ss Seq
TTGCTCTATCACCTTTCCAGATG
3' ss Score
9.49
Exon sequences
Seq C1 exon
CTTGTCCAGAGAATCAATTCCATCTACAGTGCAAAAAGAGGGAAAAAACGATTGAAGAAACTTTCTATGTCCAACATTGAGACTGCATCCCTGAGAG
Seq A exon
GTGCGACGCACACATCATAGTTTAGTGAATCCATTTGGTTGCTGCAGAAGTAACAGATTTAATTCTTCTGTTCAAATCTGCTTCAGGCTCAACTTTGTTTAGAGCTTTCTGCTGTGAATGATGATAATTTTTTCTTGTGAGAGGAAAAAAATGGGAATGAGCTAAAAATAAACCAGATTTTCACTGTTGTCTATCTTATCCCATGACCAGCTAGACTCACCCCGCCTGTTCTTTAGCTCAGATTTTCAGTGGTTTATTTCTGTAAGTTTTTTTCCAAAATTCACAATTTTAACTCTATAATTCATTCATATTTTTTCCTGGCATGAACATGTGAATATAACTCTGCCTGGACTTCAGATTCTTTCTGGAAAAGCATGGTTCCAGAAGGAAATTCAGGCTGTGTTTATAGTAGGAGTATGATGAAATTTTAATGTGACAGAAACACGCCTTATTGTAAAGTTACTTTTGCATGCTACTCAAATTCAGTCTGGTCAATTCTGCCAATTGAAAATATTACCTAGGTAAGGTTCATAAGGCTTCCCTTGACTTCTCAAGTGCTGCATAACTATATTTAAAAAAATTGCAATTTTGAATAAGTATCAGAATGGTTTACACAGATTGGGGTTCAGTGCAATGATTTGCTACAGTGGAGAATTAATTCTACGTTTTCATGAAGCTTTTATTCTCAAGCAAAATGGTAACTTATTCCAATCAAAAGATAATCTGAACAGTCACTCAAACTGTTTATTTCAAGATGTTTGAAAACTCCAGAGAGAGCGTGTCTGGATCACAATGTTCAGTGTGATGTGTTTTTCCCCAGTTTCACCACAGTAAATTGAGTTCATGTTTGCTTTGGTTTTGCATTAACTGATTGCTCTATCACCTTTCCAG
Seq C2 exon
ATGAGAACAGTGAGAGTGAGAGTGACTCAGATGACAGGTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005927:ENSGALT00000009535:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=NA C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]