RnoINT0144183 @ rn6
Intron Retention
Gene
ENSRNOG00000013934 | St5
Description
suppression of tumorigenicity 5 [Source:RGD Symbol;Acc:1308995]
Coordinates
chr1:174153699-174154673:-
Coord C1 exon
chr1:174154577-174154673
Coord A exon
chr1:174153744-174154576
Coord C2 exon
chr1:174153699-174153743
Length
833 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GCCTGTTGTTACTTTTCCAGATG
3' ss Score
9.97
Exon sequences
Seq C1 exon
CTTGTCCAAAGAATTAACTCTATCTATAATGCCAAGAGAGGAAAGAAGAGGTTGAAAAAGCTGTCTCTGTCCAGCCTTGAGACAGCCTCATTGAGAG
Seq A exon
GTAGGTGTTGATGTCTAAGCTGGGTCACCTTTGCGGGTCCTTGAACATCAGGAATGGGGAGAAATGTGGATGGGCTTCGATTTATTTCACCTGCGATTGTAGTGGGATCCTCTGCTTCATAGGAGAGTAGCAAGCACCCATCCAGAAAATGGCCACAGAAGTGGGAGGGCCTGAGAGGAAATTAGCTCTGGGATGGTTTCCCTCAGGCTTTGGACTACTAGGCCTTGAGTTAGGACATGTGAGAATCTGCTTTGAGCAAAGGGGAAGGCCAGACCTACTGAGCACTGTGGTCTGTTTCCCATACCAGATCTTGGATTATCTGAGGCAGGTCCTTTGTCTTCCAGGCATTTAGGCCTCTCTGCTGGCTCAGCCTTCAACTTTAGGCCCTCAGCTTCCCAGTAGGCGTTTGCATATAGGTTAGCACTGGAGGCCTGATCTCTGAGGTATCCTGGTCCTGAGCCATTTACCTCCTGCCCTTAGATGCCTAATCATTGGCCCAGAGTAGCCCAGACTAGATTTAAGTCTATTCCTCATTAGTGAAGTTGGGAGGCCCACAGATCAGGAAGATAGCAGGTAAATGCACTTGCTGCCAAGCCTGCCCACCAAAGTTTGAGGTCACAAAACCTGTGTTAGGAGGAGAGAATCAACTACAAACTTCTGATCTCCACATGAACATGGCTGCATGCATAAGCCCATATTCATTCATTCATTCTCTCAAACACAAACACGCACACAATGAATGTAAAAACTTTTTTTTAAAAAAAGAATTTGGGAAATAGACTCCAAAAATATTTGCTGTAGGCCATCATGTCTGCCTGTTGTTACTTTTCCAG
Seq C2 exon
ATGAGAACAGTGAAAGTGAGAGTGACTCTGATGACAGGTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013934:ENSRNOT00000064902:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]