HsaINT0159827 @ hg38
Intron Retention
Gene
ENSG00000166444 | ST5
Description
suppression of tumorigenicity 5 [Source:HGNC Symbol;Acc:HGNC:11350]
Coordinates
chr11:8713998-8714706:-
Coord C1 exon
chr11:8714610-8714706
Coord A exon
chr11:8714043-8714609
Coord C2 exon
chr11:8713998-8714042
Length
567 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CTCTGCTGTTCCTTTTCCAGATG
3' ss Score
12.94
Exon sequences
Seq C1 exon
CTTGTCCAAAGAATTAACTCCATCTACAATGCCAAGAGAGGAAAGAAGAGATTAAAAAAGTTGTCTATGTCCAGCATTGAAACAGCATCACTGAGAG
Seq A exon
GTAGGCTTTGGTGCCAGAGCTGGTTCAGCTGTTTGGGGCCCTTGGGCATTAGGAACGGGAGAGGCATCAATTTACCTGTGGAGGGTAGAGCCCTGCCAGGAAATGGCCACGTAGGAGGGAGGAGCAGACAGGGAAGAAAGGTCTGGGATGGGTTCCTTCAGACTTTGGGCTGTGAGGCCCTGAGCAGGGAGGTGGGTGTGGGAATCGGCTTCTGCAAAAGGAAAGGCCAGACTCACTGAGCATTGCGGTCTGTTTCCCATTTCAAATCTTGACCTCCTGGAGGCAGGGTCCATCTTTTCCAGGCCTGTAGGCCCCTCTTCTGGCTCAGCCTCCAACTCAGGCCCTCAGCTTCCCTCATGGGTTTGAATATAGGATTCGCAGTGTGAGCTCTGAAGGAGCCTGGCCCCAGGCCACTCAGCTCCCTGCCTGCAGATGCCTGACCATGGGCCCAGAGTAGCCCAGAGAAGGTAGAGATCCATCCCCTGTGAGAAAAGCTGGGGTGGTGGGGGAGCAAAAAACATTGGCTGTGAGGTCCAGCAAGTATGTACTCTGCTGTTCCTTTTCCAG
Seq C2 exon
ATGAAAACAGTGAGAGCGAGAGCGACTCTGATGACAGGTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166444:ENST00000534127:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=NA C2=0.862
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains