DreINT0156561 @ danRer10
Intron Retention
Gene
ENSDARG00000037363 | st5
Description
suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
Coordinates
chr7:28228720-28228938:-
Coord C1 exon
chr7:28228842-28228938
Coord A exon
chr7:28228765-28228841
Coord C2 exon
chr7:28228720-28228764
Length
77 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAC
5' ss Score
5.99
3' ss Seq
GACATATTCTCTGTTTGCAGATG
3' ss Score
10.43
Exon sequences
Seq C1 exon
GTGGTGTTGAGAATAAACTCTATCTACTGTACCAAAAGAGGCAAGAAGAGGCTAAAGAAGCTTTCACTTTCAAACATAGAAACTGCATCTTTACGAG
Seq A exon
GTACACATTTTAGCTTGTTCAAGTCCAAACCCAAAAAATGTTGTCTGTGGACCATCTGACATATTCTCTGTTTGCAG
Seq C2 exon
ATGACAACAGCGAGAGTGAAAGTGACTCTGACGACAGGTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037363:ENSDART00000133050:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.812
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTATCTACTGTACCAAAAGAGG
R:
CTTTGAACCTGTCGTCAGAGTCA
Band lengths:
127-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]