MmuINT0153211 @ mm10
Intron Retention
Gene
ENSMUSG00000031024 | St5
Description
suppression of tumorigenicity 5 [Source:MGI Symbol;Acc:MGI:108517]
Coordinates
chr7:109540392-109541432:-
Coord C1 exon
chr7:109541336-109541432
Coord A exon
chr7:109540437-109541335
Coord C2 exon
chr7:109540392-109540436
Length
899 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GCCTGTTGTTACTTTTCCAGATG
3' ss Score
9.97
Exon sequences
Seq C1 exon
CTTGTCCAAAGAATTAACTCTATCTATAATGCCAAGAGAGGAAAGAAGAGGTTGAAAAAGCTGTCTATGTCCAGCCTTGAGACAGCATCATTGAGAG
Seq A exon
GTAGGTATTGGTGTCTAAATTGCATCACCTTTGCAGGTCCATGAATATCAGGGATGGGGAGAGATTGACTTCAGTTTATCTCACCTGAGGTAGTAATGGGATCCTTCTGCTTTGTAGGAAGGTAGCACTCTTCCACAAAATGGCCACATAAGTGGGAGGGGCTGAGAGGAAATAAGCTCTGTGATGTTTTCCTTCAGACTTTGGACTATGAGGCCCTGAGTTAGGACATGTGGGAATCTGCTTTGGGCAAAAGGAAAGGCCAGACTTACTGAGCTCTCTGGTCTGTTTTCCATTTCAAATCTTGGACTGAGGCAGGTCCTTTGTATTCCAGGCATCTAGGCCTCTCTGTGGCTCAGCCTTCAACTTAGGCCCTCAGCTTCACCCACCCAGTAGGTGTTTGCCTATAAGTTAGCAATGGAGGCCTGATCTCTGAGGTATCCTTGTTCTGAGCCATTTGCCTCCTGCCCTCAGGTGCCTATCATTGGCCCAGAGTGGCCCAGAGTAGCCCAGACTAGGTTTAGGTCTATTCGTCATTCGTAATGTTGGAAGGCTCACAGGTCAGCAAGATAGCTTAGCAGATAAATGCACTTGCTGACAAGCCTGGCCACCTAAGTTTGAGCCACAAAGCCTATGTGTTAGAAGGAGAGAATCAACTCATACAAACTGCCTTCTGATCTCCATATACACGTGGCTGCTCGCGTAAGCCCATATTCATTTTTGTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCACACACACACACAAACACACACACGATAAATATAAAAAACTATTTTTTACAATTTGGAAAATAGACTCCAAAAATATTTGCTATAGGCCAATGTGTCTGCCTGTTGTTACTTTTCCAG
Seq C2 exon
ATGAGAACAGTGAAAGCGAGAGTGACTCTGATGACAGGTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031024:ENSMUST00000077909:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types