BtaINT0141883 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67779699-67780877:+
Coord C1 exon
chr5:67779699-67779827
Coord A exon
chr5:67779828-67780760
Coord C2 exon
chr5:67780761-67780877
Length
933 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GTGCTTGTCTGTCCGAGCAGTCG
3' ss Score
5
Exon sequences
Seq C1 exon
ACGCCAGGCCACACCGGCCTGGGAACAGGGGTGTTCTTTGCCATCATCCTGGTCATCGGAGCCATTGCTTTGGCAGTGTACTCCTACTTTCGACTAAACCGGAGAACGATTGGCTTCCAGCATTTTGAG
Seq A exon
GTAAGACAGAGAAAAACAGGACCATGGGGATGGGGGTCCATTCTGAAACCCAGCTCCAGCTCTGGGCTACTCCAGCAGACCGGCTGCTTCCTCGATGAGCACTTGGCACACTTTTCCTGTCTCCTGGATGGGGCCTCTGCCCCGAAGAGATCAGCAGTGGCAGCTCCAGGGCCCTCTACCTGGCTGAATCAGAGGATGGAGGAGGGCGAAGGGCAGCCAGTAGCCCTTCATGCCACAGGTGTGGCTTGGAGCCAAATTCACCAGGGGCCCAGGAGGCCACTCACCTTGGAGGAATCACAAGACAAGCTTCAAAGCTGACTCTGAGGGTGGGGACACGTTGGGGGTCTGCACAGCCAGAGGCCTCAGGTCACAGCCAGTGAAACACACTGGCCCTATTTGAACAGCTGAACCCACATCCAGGTCAGTGGGTCTTAGTTCACCATGGGAGACCCTGCGGGCCGGATACGGCTGCAGCCCCCAAGCAGTAGGTCACTTCCTTCTGGCAGATAACCTATACAAGGATTATATACACCACATTTAACAAAAGTGCCATGCTGCACGATTCCTTTTATACTAAGTTCAAGGATAGGTAAAACCATTCCAGGTGATGGGAGTCAGAAAAGCAGTTTACCATGGGTGGGACCAGATATTGGCAGGCAGGGGGCATGAGGGCACCTCCTGGAGGATGGAGATGCCCTGTATGCTGATTTGGGTGGTGGTCACACATGGGTGAACATATTTAAGAAGTCATTGAGCTGAACACTTAAGATTGGTGCATGATATTACATCTAGATCAGATCTCAATAAAAGGACAACAGAAAAGTTCCCGGAGGTGGAGGTGGGGGCGGGGCTTGCCTTAGCTTCCGACTTGGCTGCGACACCCTACCTTGGGGACTTCGTGGTGCTCAGCCCTGTGCTTGTCTGTCCGAGCAG
Seq C2 exon
TCGGAAGAGGACATTGACGTTGCAGCTCTTGGCAAGCAGCAGCCCGAGAATATCTCGAACCCCATGTACGAGAGCACAACTTCAGCAACCCCGGAACCTTCCTACGACCCGTTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010:ENSBTAT00000007896:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCGGCCTGGGAACA
R:
TGAACGGGTCGTAGGAAGGTT
Band lengths:
235-1168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]