MmuINT0153452 @ mm9
Intron Retention
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86306246-86308903:-
Coord C1 exon
chr10:86308775-86308903
Coord A exon
chr10:86306363-86308774
Coord C2 exon
chr10:86306246-86306362
Length
2412 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GTCATTCTCTTTCTGAACAGTCA
3' ss Score
8.46
Exon sequences
Seq C1 exon
ACGGCTGCCCACTCTGGCCTAGGAACAGGCATATTCTGCGCTGTCGTCCTGGTTACTGGTGCGATTGCTCTGGCTGCCTACTCCTACTTCCGGCTAAACCAGAGAACAACTGGCTTCCGGCGTTTTGAG
Seq A exon
GTAAGGGGTGGGGGGAAATGGGAAGGGGATGGTGGGACTGCCTTTTGTTTGTTTCTATGCATGTAAAGGTAGTACATGCCTGTGACCCCAGTGCTCTGCAGGCTGATGTGGCAGGATCAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACACACATATACATGCATACATACATACATACATACATACATACATACACACATACATACCTGAGGTTGTCCTCTGGCATCCATATGCATGTACACACATTGGCACAACACCAAATGTCCAAGACTGAGTTATTTACAAAGAGCCTGGGTTTATTGACTTGTGGCTCTGAGTTATTTACAAAGAGCCTGGGTTTATTGACTTGTGGCTCTGAGTTATTTACAAAGAGCCTGGGTTTATTGACTTGTGGCTCTGAGTTATTTACAAAGAGCCTGGGTTTATTGACTTGTGGCTCTGAGTTATTTACAAAGAGCCTGGGTTTATTGACTTGTGGCTCTGAGTTATTTACAAAGAGCCTGGGTTTATTGACTTGTGGCTCTGAGTTATTTACAAAGAGCCTGGGTTTATTGACTTGTGGCTCTGAGTTATTTACAAAGAGCCTGGGTTTATTGACTTGTGGCTCTGGAGACTGGGACGCCCAAGACCAGGGCCTGGGATGACTTGGCTTCCGACAAGGGTCTCGTGCTAACTCAGCTCACAGCAGAAAGCTAAAATGTTAACTAGAGAAGTGCAGAAGCAGCAAGGCCAGGGACAGACTCACTCGTTACCAAGCCAGCAGCTGTGACACCTGGAAAAGAGTGTTGCAGTACACGAAAGGCAGCCCCTCAGCCCTTACAGGCTGCGCCTCCCACAGTCAGTCCACACAGCGGGTTCTGGAGGAACACACACCAGGTACACCCCGACAGCCAGCTCCAGGAGCTAGGCTAGCTCAAAGATGTCCTTCCCCCCAGAGCTGGTGTTTGGTTATAGCAATGAGAATAACCACCCCACCCATGCTCCTGCCTCCTGGGGGGAGTCCCTAGATAGGTGCCCAACTTAGTGGGCACAGGAGTTGAGACTGGCCCTGAGAGTTGGGGATCAGAGTCAAACACCCGCAGAGCCTCATTCTCAAGCCAGCAAATCTCATTTCATTCTCTGTGTAGAGTTGAGTCTGACTCACATCATCAGTAAGCTTTGGAGCTGACCATGGGGTGGCCCATGTGTCAGTCACTTTTCTGGTACCATGGTAACATAATACCATAATGAAGCTAAGTGGAAGAAAAGTTAGCTCGTGGTTCTAACTCATGATCACTTGGTGACATGGTCACTTGGTAACTTGGCCTTTGGATCTGTGGCAAGGCATATTGTAGCAGGAACACATAGCCGAGTACTTCATGGTGGCTAGAGAGTAAAGAGAAAGGAAGAAGATGAGGCCAGGGTTCCCAAGTCCCCTTCATGGGCACACCCCTCAGATACCAAACTTTGTCCCACTAGGCCCCACCTCCTAAAGGTCCCACAGACTCTCAAGAATGCTAGGGTGGGGTCCAGACTTTAACCCAGAGCCTTTGCAAGACACATCTCCAGACGTGCAGCAGCTGAGCATCCTTCCTTGTGGACTCTACTCTTCACTGGTCTCCTTTCCACTCTCAGAGGATGCTGTGCAGCGCCCTCAGGCAGCAGCCCATGCCTTCCAGAAGATAGCTTGCCTGTTTATAAGCTCAGAGGCAACTGTCCAAAATATCTATTACTATAACCAAAACACTACAACTAGATCACATACAGCCTAGAGGTCTGTTCAGCTCACAGATCTGAAAGCTGGATGATCTGAAACCATGTGGCCACCCCTGGTAAGGGCTCTCTTGCTACAGGGGAAACTGTCCAAATTCCCCACACAATGCAGAGAATGAACTAGGGTGACAGGGCCAAGTCCTGGCTCAGAGTCACAATCCCACTGGCTCACACTTCACCCACTGTGCACTTTGACCTCAACCAAAGGTCCTGCAGATAGCACAGCACAACCAAGTTTCTGCCCACCTAAATAGATCAAAAGGGGACTAGATTTCAAGGCATGCATGGGTGAGAACATTCAAAGCATTATGTTTGAATATGGAAAACAAGTATGCATATCAGAGATAACCTTTCCAAGTTCAGGAATGACCACACAACTCCAGGGTAACAAGAGGCTCAACAATGCTTACGGTAAGAGAATTGGCAGCATAGGCCATGGGAACATTTCTGGGCTGTAGAGATGTCCTATGGGCCAGATTGGGAGACACACCTGGTCAGATATGTAAGCTGTCCCGTGGGCCCAGTGCCTTCTCTCACAAGTCAGTCATCTCAACAGTGTTGCTGAGAAGGCTCCTGAGAAGAATGGCTCAGGGATGGGGACAGTCCTGCCTCTCAACCCTTGTCATTCTCTTTCTGAACAG
Seq C2 exon
TCAGAAGATGACATTGATGCCTTGGCCTTTGGCAAGCAGCAGCCTGAGAGTATCACAAACCCTTTGTATGAGACCTCAACGCCGGCAGCCCCCGAGCCCTCCTGTGACCCCTTCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-Stab2:NM_138673:67
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.641
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: